Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00343 ATGGCAATGCACAAGAGCAGTTCCAGTTCAGCATTGGGTCCGGGAGGCTTAGACCTAACTCAAGCTTTCTTTAAGTCCATCGTGAACGCTGCACCTTCTTCTCCCACAAAGCGCCACACCAAAATCTCCGTTGTTGGTGCGGGCAACGTGGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTCCTCGTCGATGCCATTCCTGATAAACTCCGTGGCGAGATGCTGGACCTCCAGCACGCCGCCGCCTTCCTCCCTCGCACCAGAATTCAGGCTTCAACCGACTACTCCGTCACTGCGGGCTCCGACCTCTGCATTGTCACCGCCGGTGCCCGCCAAATCCACTGCGAGTCAAGGCTGAACCTCTTACAAAGAAATGTCACCCTCTTTCAGAAAATCATACCCCCTTTGGTTCGTTACTCTCCCGACACCATTCTCCTTATCGTTTCGAATCCTGTGGACGTGCTCACTTACGTAGCATGGAAACTTTCAGGTTTCCCTTCAAACCGTGTCGTCGGCTCCGGCACTAACTTGGACTCCTCACGCTTTCGTTTCCTCATCGCTGATCATCTTGATGTTAACGCTCAAGATGTCCAGGCTTTTATAGTGGGAGAACACGGTGACAGCTCGGTGGCTTTGTGGTCTAGCATTAGTGTTGGGGGTGTTCCAGTGCTGAGCTTTTTGGAGAAGCAACAAATTACGTACGAGAAGGAAATGCTGGAGAACATACACAAAGAAGTTATAGAGAGTGCTTATGAGGTTATAAGCCTGAAAGGGTACACTTCTTGGGCGATAGGATACTCGGTGGCAAACTTGGCACGGAGCATTCTTAGGGACCAAAGGAGGGTTCACCCTGTGTCGGTTCTTGCAAAGGGTTTTTATGATATCGAAGATGGGGAAGTGTTCCTCAGCTTGCCCGCACAACTTGGAAGAGGAGGGGTATTAGGTGTGACCAATGTGCATTTGACAGAAGAAGAGAAACACAGGCTTAGAGACTCAGCCGCCACTATCCTCCAAGTGCAGAATCAGCTGGCTATTTGA 1059 0.509 MAMHKSSSSSALGPGGLDLTQAFFKSIVNAAPSSPTKRHTKISVVGAGNVGMAIAQTILTQDLTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTRIQASTDYSVTAGSDLCIVTAGARQIHCESRLNLLQRNVTLFQKIIPPLVRYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVVGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQQITYEKEMLENIHKEVIESAYEVISLKGYTSWAIGYSVANLARSILRDQRRVHPVSVLAKGFYDIEDGEVFLSLPAQLGRGGVLGVTNVHLTEEEKHRLRDSAATILQVQNQLAI* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00343 352 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 182 345 IPR022383 GO:0016616
Lapu2g00343 352 Pfam lactate/malate dehydrogenase, NAD binding domain 40 179 IPR001236 GO:0016491
Lapu2g00343 352 SUPERFAMILY LDH C-terminal domain-like 180 350 IPR015955 GO:0003824|GO:0016616
Lapu2g00343 352 Hamap L-lactate dehydrogenase [ldh]. 39 351 IPR011304 GO:0004459|GO:0005737
Lapu2g00343 352 ProSitePatterns L-lactate dehydrogenase active site. 209 215 IPR018177 GO:0004459
Lapu2g00343 352 Gene3D - 21 181 - -
Lapu2g00343 352 PRINTS L-lactate dehydrogenase signature 153 173 IPR001557 GO:0016616|GO:0019752
Lapu2g00343 352 PRINTS L-lactate dehydrogenase signature 177 195 IPR001557 GO:0016616|GO:0019752
Lapu2g00343 352 PRINTS L-lactate dehydrogenase signature 66 90 IPR001557 GO:0016616|GO:0019752
Lapu2g00343 352 PRINTS L-lactate dehydrogenase signature 41 65 IPR001557 GO:0016616|GO:0019752
Lapu2g00343 352 PRINTS L-lactate dehydrogenase signature 207 220 IPR001557 GO:0016616|GO:0019752
Lapu2g00343 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 179 IPR036291 -
Lapu2g00343 352 Gene3D - 182 350 IPR015955 GO:0003824|GO:0016616
Lapu2g00343 352 NCBIfam L-lactate dehydrogenase 44 343 IPR011304 GO:0004459|GO:0005737
Lapu2g00343 352 CDD LDH_1 37 349 - -
Lapu2g00343 352 PIRSF Lac_mal_DH 36 352 IPR001557 GO:0016616|GO:0019752
Lapu2g00343 352 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 22 351 - -
Lapu2g00343 352 FunFam Malate dehydrogenase 35 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00343 Lapu-Chr2 2853290 2854660 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00343 K00016 - gmx:100818856 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00343 2 2853290 2854660 Lapu2g00343 2 2853290 2854660 ECH
Lapu2g00343 2 2853290 2854660 Lapu3g01315 3 14425022 14427449 PCT