Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00296 ATGGATGATGAGTTTTTTCACGGAAACAAAGTGCCATCTGGTGTCATAAAATCGATAAAATTTGATGTCTTAGCTGAAGAGGATATAGAGAAAGTCTCTGTTTTGGAGATAAAAGCAGCCGGACAGGTCACTGGATCTACTTTGGGACTTCCAAATGCATCTGACGAGTGTGCCACTTGTGGCTCTAAAGACAAAAAGATCTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTTTTCCCATACTCCATCCATATTTTATGTCAGAGATTGCACAAATCTTGAATAAGATTTGCCCTGTTTGTAAATCTATTCGTCATAAAACGAAGGGTGCTCAATTAATCTTTGGAATCAAGCGGTCTATCAATTGCAAATATTGTTCTGGAAATGGGATGGGTCGTTATCCAACGATGAAGTTTAAATTTTCTTCTAATGATCTCTATAGAAGAACTGCAATTATTGTTGAAGTGAGTGATAAGGCCTCAAAGAAAACTTTGGGACGAAGTCTGCCTGCTGATTATTGGGATTTTATTCCTTTTGATGCTCAACAAGAAGAAAATTATGTAAATAGAAGGGTTTTGTCACCAGGGCAGGTTACTTCTTTGTTGAATGATGTTGATCCAAACTTCATTGAAAAATATATTCCAAGAAAGAATCTGATTAGTCTTAATTGCTTCCCAGTGACTCCAAATTGTCATCGTGTAACAGAAGTCCCTTATGCAATTTCTAATGGAAACCGATTGAGTTTTGATGACAGGACTCGATCTTGTAAGAAATTGGTTGATTTTAGGGGTACAGCTAATGAGTTAAGTTCTCGTGTTTTGGATTGCCTGAGGATTTCTAAGCTAAATCCTGATAAAACACCTAATAATAGTATTTTTGCTGATCTTCAAAAAAAAAAAGTTGCAGAAAATGCTTGTAATTCTTCTGGTTTAAGATGGATAAAAGATGTGGTTCTTGGAAAACGCAATGATAGTACGTTCCGTGCTGTGGTTGTTGGTGACCCATACCTTGAGCTCAGTGAAATTGGCATACCCTGTCACATTGCTGAAAGTTTGCAGGTTTCTGAGTACGTGAACAGGCAAAATTTGGAAAAGCTGCTTTGTTGTTGTGAGCTACGCCTTTTAGAGAAGGGGCAGATAAATGTTTGCAGAAAGGGTAGTTCAATTCATCTGTTTAAAAAGGAAAATCTACAGATAGGAGATCAAATTTTTAGACCTCTTTGTGATGGGGATAAAGTTCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTGCTCTCACTGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGTATTAACCCACTCTGTTGTTCCCCGCTTCGTGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCAGTTAGTGCTAGAGTTGAGCTTAATGAGCTTGTTGCTTTAGATAGGCAATTGTTTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCTGAGGATAGTTTAACTGCTGCATATTTGCTAATGGAAGATGGGGTGCTTTTAGATGTTTATCAGATGCAGCAGCTTCAAATGCTTTGTAACAAAGGTTTAGCTTCTCCTTCAATTGTAAAAGCTCCTTCAAGTAAGAGCTCATTTTGGAGTGGCAAGCAGCTGTTTAGCATGCTCTTGCCTTCTGATTTTGACTATTCTTTTCCTTCAGATGGTGTTGTTGTTAGTGATGGGGAGCTTGTATCTTCTTTTGAGGCTTCTGGATGGTTACGTGATTCTGACTGCAATGTTTTCCATAGTCTTGTGGAACATTTTCAAGGAAAATCTCTGAACTTTTTGTTTGCTGCGCAGAATGTTTTGTGTGAATGGTTGTCTATGACTGGTTTTAGTGTTTCACTCTCAGATTTGTATCTCTCTTCTGATTCCAATGCACGAAAAAACATGATTGAGGAAATCTCTTATGGCTTACAAGATGCAGAGAAGGCGTGTAATTTCAAACAGTTATTGTTGGATTGCTATTGTGATTTTCTGTCCGGAAATCATGAAGAGAGTGAAAATTTAATCACTGTTGATGCTGATAGTTTGAATTATGAAAGACAAATATCTGCTGCTCTCAGTCAAGCATCAGTTGATGCTTTTAGGCATGTTTTTCGCAATATTCAGGGTTTAGCTGACAAATATGCATGTACAGACAATAGTTTTCTTGCCATGAATAAGGCTGGAAGCAAGAGTAGTTTAGTGAGATTAGCACAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTCCGCTTATCTTACAGACTACCCCGCCATCTTTCATGTGCTGCTTGGAATAGTCAAAAGAGGCTTGATTCAATCCAGACATATTCTGGTGCCCATGAATCTGTTCAGTCTTACATTCCATGTGCCGTGGTCAAAAGCTCATTTCTAACTGGGTTGAATCCACTTGAATGTTTTGTTCATTCTGTGACAACCCGTGCCAGTGGTTTCAGTGAAAATGCAGACCTTCCTGGAACATTAACGCGAAGACTGATGTTCTTCATGCGTGATTTGTTTGCTGCATATGATGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATATTGAAGAGGACTCTTCATGTGATGAAAGTTTCCAAGAGTATGCTATTGGTGGTGAACCAGTTGGGGCACTTTCTGCTTCTGCAGTTTCAGAAGCTGGATACAGTGCTTTGGATCAACCAGTTAGTCTACTTGAAGCGTCTCCTTTGCTGAATTTGAAAAATGTTCTTGAGTGCGGTTCAAAGAAAAAAAATGGTGACCAGTCTGTGTCTTTATTTTTGTCTGAAAAAGTTGGTAAACAGAGACATGGGTTTGAATATGCTGCTTTAGAAGTTAAGAATTATTTGGAAAGATTGCTGTTCTCAAAAATTGTTTCTACTGTGATGATAATATTCACCCCACATGATAGCAGCAGCCTAGAGAAATACAGTCCTTGGGTCTGCCACTTTCATCTAGACAAGGAAATTGTAATGAGAAGAAAGTTGAAAGTGAATTCTATCATCGATTCTCTTTACCAGAGATATTACTCCCAGAGAAAAGAACCAAAAGTCTGTTTTACCAACTTGAAAATATCAAGCAAAAGAAAGTGTTCTGCTGATTCCACGGCTAAGGAAGGTGAAGACACTTTTATAGATAAAGAAGACGGAGATGATTGCATTACAATCACAATTGTTGAAAATTCTGAGAATCCTATACAACTGGATTCCGTTCGGGACTTGATGATACCTTTTTTTCTAGGAACAACAATAAAAGGATTTATGGACATCAAGAAGGTGGACATTCTCTGGAATAATCAATCAAAAGTAACAAAATCTTATAATGGTTCTTCTGGTGAACTGTACTTGAGGGTTACTGTGTCCACCACGGGCAACACTGGAAGATTCTGGGGTGTACTTGTAAGTCATTGTCACAAGATAATGCAGATAATTGACTGGCCACGGAGTCATCCAGATAACATAAATTATCTCTCATCAGCCTACGGAATTGATGTGGCGTGGCAATATTTTTACAGGAGTTTGGCATCTGCAATATGTGATACTGGAAAGTCCATCCTTCCTAAGCATCTGCGTCTTCTCGCGAATAGTCTGTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCACAGCAACGACAACATGCGTCCGTTTCATCACCATTTGTGCAAGCATGCTTTTCTAATCCAGGTAGGAGCTTTATAAAAGCTGCCAAGTCTGGAGTCACGGATAATCTCCAGGGCAGCCTGGATGCATTGGCCTGGGGAAACTGTCCATCTATGGGGACAAGTGGACTGTTTGATATCATATATTCAGAAAAGGGACATGAGGTAGCCAAGTCGGTAGATGTGTATAAGCTTCTAGAAGCCAGTTCTGACAAGCCGAACAATAAGAATGGTATACATTCTCACAACAGTTCATCTGACAAATGTGGTTCTGAGTTTAGGCATAAAAATGGTTACGTCTTTAAAGAGGGAAAACAGTGGAAAAACATTCTAAGAAATTTTGTGACGGTAAATGATATTCAGAAGCTGACTTTTGCTTCAAGGTGCATATTGAACAAGTATTCAATTGATGAGCTGCTTAGTGAGAGTGACAGATCAACAATGCTAAGAGTTTTGAATTTTCATCCTCGTAGAAGTGAGAAGTTAGGTATTGGACCACAGGACATTAAGGTTGGATGGCATCCTAAATTTCAGGATAGCCGCTGCTTCCATATAGTACGAACTGATGGAACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGAGATCGTTGATCCAAAAATGTCAAAGATCCAGAAGAAAAAATGGTCAGCACGTGATGACACGCAAATTCAATGCGTGTCCAAGCATAATAAGTGA 4425 0.3887 MDDEFFHGNKVPSGVIKSIKFDVLAEEDIEKVSVLEIKAAGQVTGSTLGLPNASDECATCGSKDKKICEGHFGVIKFPFPILHPYFMSEIAQILNKICPVCKSIRHKTKGAQLIFGIKRSINCKYCSGNGMGRYPTMKFKFSSNDLYRRTAIIVEVSDKASKKTLGRSLPADYWDFIPFDAQQEENYVNRRVLSPGQVTSLLNDVDPNFIEKYIPRKNLISLNCFPVTPNCHRVTEVPYAISNGNRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKTPNNSIFADLQKKKVAENACNSSGLRWIKDVVLGKRNDSTFRAVVVGDPYLELSEIGIPCHIAESLQVSEYVNRQNLEKLLCCCELRLLEKGQINVCRKGSSIHLFKKENLQIGDQIFRPLCDGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVSARVELNELVALDRQLFNGQSGRNLLSLSEDSLTAAYLLMEDGVLLDVYQMQQLQMLCNKGLASPSIVKAPSSKSSFWSGKQLFSMLLPSDFDYSFPSDGVVVSDGELVSSFEASGWLRDSDCNVFHSLVEHFQGKSLNFLFAAQNVLCEWLSMTGFSVSLSDLYLSSDSNARKNMIEEISYGLQDAEKACNFKQLLLDCYCDFLSGNHEESENLITVDADSLNYERQISAALSQASVDAFRHVFRNIQGLADKYACTDNSFLAMNKAGSKSSLVRLAQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKRLDSIQTYSGAHESVQSYIPCAVVKSSFLTGLNPLECFVHSVTTRASGFSENADLPGTLTRRLMFFMRDLFAAYDGTVRNLYGNQLIQFSYDIEEDSSCDESFQEYAIGGEPVGALSASAVSEAGYSALDQPVSLLEASPLLNLKNVLECGSKKKNGDQSVSLFLSEKVGKQRHGFEYAALEVKNYLERLLFSKIVSTVMIIFTPHDSSSLEKYSPWVCHFHLDKEIVMRRKLKVNSIIDSLYQRYYSQRKEPKVCFTNLKISSKRKCSADSTAKEGEDTFIDKEDGDDCITITIVENSENPIQLDSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQSKVTKSYNGSSGELYLRVTVSTTGNTGRFWGVLVSHCHKIMQIIDWPRSHPDNINYLSSAYGIDVAWQYFYRSLASAICDTGKSILPKHLRLLANSLSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAKSGVTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVAKSVDVYKLLEASSDKPNNKNGIHSHNSSSDKCGSEFRHKNGYVFKEGKQWKNILRNFVTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPRRSEKLGIGPQDIKVGWHPKFQDSRCFHIVRTDGTVEDFSYRKCILGALEIVDPKMSKIQKKKWSARDDTQIQCVSKHNK* 1475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00296 1474 CDD RNAP_IV_RPD1_N 26 856 IPR040403 -
Lapu2g00296 1474 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1288 - -
Lapu2g00296 1474 PANTHER DNA-DIRECTED RNA POLYMERASE 20 1286 IPR045867 GO:0003899|GO:0006351
Lapu2g00296 1474 Gene3D - 315 486 - -
Lapu2g00296 1474 Gene3D RNA polymerase Rpb1, domain 3 487 628 IPR042102 -
Lapu2g00296 1474 Pfam Protein of unknown function (DUF3223) 1368 1439 - -
Lapu2g00296 1474 Pfam RNA polymerase Rpb1, domain 2 320 477 IPR000722 GO:0003677|GO:0003899|GO:0006351
Lapu2g00296 1474 FunFam DNA-directed RNA polymerase subunit 487 625 - -
Lapu2g00296 1474 SMART rpolaneu7 218 507 IPR006592 GO:0003677|GO:0003899|GO:0006351
Lapu2g00296 1474 Gene3D RNA polymerase II, clamp domain 7 123 IPR044893 -
Lapu2g00296 1474 Gene3D - 629 809 IPR038120 -
Lapu2g00296 1474 Gene3D RNA polymerase ii 353 405 - -
Lapu2g00296 1474 Gene3D - 1350 1441 - -
Lapu2g00296 1474 Pfam RNA polymerase Rpb1, domain 3 484 631 IPR007066 GO:0003677|GO:0003899|GO:0006351
Lapu2g00296 1474 Pfam RNA polymerase Rpb1, domain 1 16 255 IPR007080 GO:0003677|GO:0003899|GO:0006351
Lapu2g00296 1474 Pfam RNA polymerase Rpb1, domain 4 714 760 IPR007083 GO:0003677|GO:0003899|GO:0006351
Lapu2g00296 1474 FunFam DNA-directed RNA polymerase subunit 1353 1444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00296 Lapu-Chr2 2422052 2435178 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00296 K16250 - gmx:100796185 2482.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00296 2 2422052 2435178 Lapu2g00296 2 2422052 2435178 ECH