Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02180 ATGGCAACTGTTGTATCACGCTTCTCATTGTCACTGATTCCTTTCAATCAACACAAATTCGAAGCCAAATGCTTGTGTTTTGACAAACCCTTCATCCGAAAGAAGCACCACCAACTTGGATTGCAAAATCTCCTTTTCCCCTCTTCCCAAAAACCATCTTCGAAATTGTGTGCCACTTCACGATTGTCCATTGAGGAAACAGAGCAGCAAGTCGGAACCTTGACCCGACCCGAAGACCTAAAAGGGGCGTCGGCGTATTTGTTTAGGACGGAAACTGGTGGCGGTTTGGTGAAGGTTTATGTCACAAAGAAAAAAGAGAGGTATTTTGTTTACATTGAGATTTCTTCGTTGGATGTGAAAGACTGTGGTGACAGTGAAACATTGGTGTTGTGTTGGGGTGTGTATAGAGGTGATTCATCGTGCTTTGTGGATCTGGACAAGACTGGTTTGAGTGGAAATGCGGCAAAGCGGATGAATGTTAGTCACTTGGTGCAAACTTCTCGTGGCAAGTTTGGAGTTGAGTTGGAATTTGATGCCAAATATGTTCCTTTGTACTTGTCATTTTTCTTGATGACATCTTTGGATGCAGGGTTGGAGATTAGAAGCCATAGGAGAACGAATTTTTGCGTGCCGGTTGGATTGCTTCTGGGTTACCCGGGTCCTTTGGGGCTTTCTTATTCTCCTGACGGGTCTGTGAATTTTGCTGTTTTCTCGAGACATGCTGAGAGTGTGGTTTTGTGCTTGTATGATGAAAAGAGTGTGGAGAAGCCTGCTTTGGAGGTTGATTTGGATCCCTACCTGAATAGGTCAGGTGACTTGTGGCATGTCTCGTTTGAGAGTGTCGAGAGTTTTGTGAGCTATGGTTATCGCTGCAGAGGGGGTGTTCATAAGCAGCACAAAGGTGATAGTTCTGCTGAGCATGTTGTTTTGGACCCGTATGCTAAGATTGTTGGTAATTCTTATCCTGGTGGTATTGGACTAGTGAAGAATCTTGGCTGGTTGAGGAAGGAACCTGCTTTTGATTGGGGTGGTGATTTTCACCCATATTTGCCCATGGAGGAACTAGTGGTGTATAGGTTGAATGTCAAGCGCTTTACACAGCACGAGTCAAGCCAAGTTCGAAGTGGTTCAGCTGGGACGTTTACTGGTTTGGCTGAGAAAGTTCAACATTTTAAAGATCTAGGTGTGAATGCTGTTCTGCTGGAGCCGGTTTTCACATTTGATGAGAAAAAAGGACCATATTTTCCTTGCCATTTTTTCTCTCCGATGCACATTTATGGACCATCTGGCGGTCCTGTGTCTTCTATTGCCTCTATGAAAGAAATGGTTAAAACTATGCATGCTAATGGGATAGAAGTTCTTGTGGAAGTAGTTTTCTCAAATACTGCTGAGGTTGGTGCTCTGCAGGGGATTGATGACTCATCCTACTATCTAACAAATGGAGTTGGGGATTTGAAGATACATAGTGCTTTGAACTGTAACTATCCTATAGTGCAAAATCTGATTTTAGATAGTCTGCGGCATTGGGTGACTGAGTTTCACATTGATGGCTTCTCTTTCATTAATGCTTCACACCTGCTGAGGGGATTTCATGGGGAGTACTTGTGTAGACCTCCATTAGTTGAAGCAATTGCTTTTGACCCAGTCCTCTCCAAGACTAAAATCATTGCAGATTGTTGGGATCCCCATGACATGGTAGCAAAGGAAATCCACTTTCCTCATTGGATGAGATGGGCTGAAATGAATGCAAATTTTTGCAATGATGTGAGGAACTTTTTAAGGGGTGAAAATCTTCTTAGCGACCTTGCAACAAGACTTTGTGGGAGTGGAGACATATTTTCTGGTAGACGAGGCCCAGCATTCTCTTTTAATTACATTGCCAGGAATTTTGGATTTTCTCTTGTAGACTTGGTTAGCTTCAGCAGTGATGACGAATTAAGTTGGAATTGTGGAGAAGAAGGAGCAACTAACAACACCAGTGTCCTTGAAAGACGGCTCAAACAAATCCGAAACTTCCTCTTCGTCCTGTTTGTGTCATTGGGGGTACCTGTTCTGAACATGGGTGATGAATGTGCCCAGTCCTCTGGTGGTTCTCTTGCATATGATGATATAAAGCCTATCACTTGGAGTGCTTTGGCAACTGGCTTTGGTAAACAAACCTCTCAATTCATTTTCTTTATGAGTTCACTGAGAAGGAGGAGGAGTGATCTTCTTCAGAGAAGGAGCTTCTTGAAAGAAGAAAACATAGAATGGTATGGAAGTGATGGGGCTCCACCAAGATGGGAAGACCCATCATGCAAGTTCCTGGCCATGTCTTTGAAGACTGAACTAACAGAGAGCTCTGTGTCTTCTGATATATCTGGAGATCTATTTATTGCTTTCAATGCAGCTGATCATCCAGAAACTACGGTTTTACCTCCGCCTCCAGAAGGAATGTCATGGTACCGCTTAGTTGATACAACTCTTCCATTTCCCGGCTTTTTCTCCAGCAGTGGTGAAGTTGTCCCTGAGAAGAGAGCAGGTTTGTTTATTTATAAAATGAAGTCTCACAGCTGCGCTTTGTTTGAGGCATATAATCGTACCATTTAA 2589 0.433 MATVVSRFSLSLIPFNQHKFEAKCLCFDKPFIRKKHHQLGLQNLLFPSSQKPSSKLCATSRLSIEETEQQVGTLTRPEDLKGASAYLFRTETGGGLVKVYVTKKKERYFVYIEISSLDVKDCGDSETLVLCWGVYRGDSSCFVDLDKTGLSGNAAKRMNVSHLVQTSRGKFGVELEFDAKYVPLYLSFFLMTSLDAGLEIRSHRRTNFCVPVGLLLGYPGPLGLSYSPDGSVNFAVFSRHAESVVLCLYDEKSVEKPALEVDLDPYLNRSGDLWHVSFESVESFVSYGYRCRGGVHKQHKGDSSAEHVVLDPYAKIVGNSYPGGIGLVKNLGWLRKEPAFDWGGDFHPYLPMEELVVYRLNVKRFTQHESSQVRSGSAGTFTGLAEKVQHFKDLGVNAVLLEPVFTFDEKKGPYFPCHFFSPMHIYGPSGGPVSSIASMKEMVKTMHANGIEVLVEVVFSNTAEVGALQGIDDSSYYLTNGVGDLKIHSALNCNYPIVQNLILDSLRHWVTEFHIDGFSFINASHLLRGFHGEYLCRPPLVEAIAFDPVLSKTKIIADCWDPHDMVAKEIHFPHWMRWAEMNANFCNDVRNFLRGENLLSDLATRLCGSGDIFSGRRGPAFSFNYIARNFGFSLVDLVSFSSDDELSWNCGEEGATNNTSVLERRLKQIRNFLFVLFVSLGVPVLNMGDECAQSSGGSLAYDDIKPITWSALATGFGKQTSQFIFFMSSLRRRRSDLLQRRSFLKEENIEWYGSDGAPPRWEDPSCKFLAMSLKTELTESSVSSDISGDLFIAFNAADHPETTVLPPPPEGMSWYRLVDTTLPFPGFFSSSGEVVPEKRAGLFIYKMKSHSCALFEAYNRTI* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02180 862 Gene3D - 747 861 IPR013780 -
Lapu1g02180 862 Gene3D Glycosidases 336 746 - -
Lapu1g02180 862 SUPERFAMILY (Trans)glycosidases 338 736 IPR017853 -
Lapu1g02180 862 Gene3D Immunoglobulins 211 324 IPR013783 -
Lapu1g02180 862 SMART aamy 359 734 IPR006047 GO:0005975
Lapu1g02180 862 PANTHER GLYCOGEN DEBRANCHING ENZYME 175 856 - -
Lapu1g02180 862 SUPERFAMILY E set domains 217 348 IPR014756 -
Lapu1g02180 862 Coils Coil 727 747 - -
Lapu1g02180 862 Pfam Alpha amylase, catalytic domain 379 465 IPR006047 GO:0005975
Lapu1g02180 862 CDD AmyAc_plant_IsoA 351 739 IPR044096 GO:0019156|GO:0019252
Lapu1g02180 862 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 221 314 IPR004193 GO:0004553|GO:0005975
Lapu1g02180 862 SUPERFAMILY Glycosyl hydrolase domain 746 857 - -
Lapu1g02180 862 CDD E_set_GDE_Isoamylase_N 221 359 IPR044505 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02180 Lapu-Chr1 36344681 36347789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02180 33 861 Glycoside Hydrolase AT1G03310 55.841 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02180 K01214 - gmx:100777953 1409.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g02180 1 36344681 36347789 Lapu1g02180 1 36344681 36347789 ECH