Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02161 ATGGCAAATCACTCAAGCTTCGGTCGCAGTGGAGTTCGAGTGGTGGTCGCCGGCGACCGCGCCACCGGTAAATCGAGCCTGATAGCTGCCATCGCGACGGAGTCATTTGCCGAGTCCGTTATGCCGGTTATTCCGCCCACTCTCTTGCCGCCTGATTTGTACCCCGATAACGTTCCTCTAACCGTCGTTGACACACCTTCCAGTTTGGACAAACAAAGAAAGCGTAACGAGGAGTTGAAAACAGCTGATGTTGTGGTTTTAACTTATGCTTGCAATGACACGGCTTCATTTTCTCGGTTGAGTTCTTACTGGTTCCCGGAACTGCAGAAGTTGGAGGTGAAGATGCCTGTAATTGTGGTTGGTTGCAAATTGGATCTTAGGGATGAAAGCCAGCAAGTGAGCTTAGAGCGCCTTATGACACAGCTACTGCAACAGTTCAAGGAAATTGTCACATGCATCGAATGCTCTGCTGCTACGCAATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTACTGCATCCAGTAGATCCACTGTATGATCTTGAAAGTCAAGCTTTAACAGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGATCGTGATATGGATGAAGCCCTCAATGAAGCAGAGCTAAATGAGTTTCAGATTAGATGTTTCAATACACCATTGCAATCATCTGAAATGGCTGGAGTCAAATCAGTCGTACAGCAGAAAGTACCTGAAGGAGTCAACTCACTTGGTCTTACTTTTCCAGGATTTATTTGTGTTCATAATATGTTCCTCAAAAAAGGGCGTCCAGAGACATTATGGGCTGTTCTAAGAAACTTTGGATATGATAATAATTTGAAACTGAAGGATGATTTCCTTCCTATTCCATCAAAGCGTGCTGTGGATCAGAGTGTGGAGCTGACAGGGGAAGCTGTAGAGTTCCTAAATGGTATCTTTCGACTGTTAGATACGGATAAAGATCGAGCCCTACGACCTGCTGAAGTTGATAAGTTATTTTGTACTGCTCCAGAAAGTCCATGGAATGATGCTCTGTATAAGGATGCTGCTGAGATAAATGACATGGGTTACATATCTCTAAATGGATTCCTATCACAGTGGGCCCTTATGACATTACTTGATCCACCATGTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGTAATCCTGCTGCAGCTCTCCGTGTCACTCGCAGAAGAGCAGTAGATCGCAAGAAGCAAGCAACAGAAAGAAATGTATTCCAATGCTATGTTTTTGGCTCTAAAAGTTCCGGGAAGTCTGCTCTGCTGGATTCATTATTGGGAAGGCCGTTCTCAAACAATTATATTCCATCAACAGTTGAGAGGTTTGCAGTAAATGCCATTGAATTAATTGGGGGAGCCAGAAAAACTCTTGTGTTGCGGGAGATACCAGAGAGTAAAGTACCAAATGTTTTGTCAAATAAGGATTCTTTGGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAACTTTCATGGAAGAAGTCCAGAGATTTGCTTGAGAAGGTTGCCAGACAAGGAGATCTAACTGGTTATAGAGTTCCTTGTCTCCTTATTGCTGCTAAGGATGATTTAACTCCATATCCAAGGGCAGTACAAGATTCAATAAAGGTTACTGAGGAATTGGGAATAGAGGCACCTATTCACGTAAGTATGAAACTGGGCGATTCAAGTAACGTGTATAATAAGATTGTCCATGCTGCTGAGCACCCTCATTTAAGCATTCCAGAAACTGAGATTGGGAGGAAAAGAAAACAATACCATCGGCTTCTTCAGCACTCTCTTGTTTTTGCTTCAGTTGGGACTGCAATGGCAGTGGTTGGTTTGGCAGCATGTCGCGCATATGCAGTGAAGAAGAATTCTTCTGGTTAG 1929 0.4329 MANHSSFGRSGVRVVVAGDRATGKSSLIAAIATESFAESVMPVIPPTLLPPDLYPDNVPLTVVDTPSSLDKQRKRNEELKTADVVVLTYACNDTASFSRLSSYWFPELQKLEVKMPVIVVGCKLDLRDESQQVSLERLMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKAVLHPVDPLYDLESQALTDRCVRALRRIFVLCDRDMDEALNEAELNEFQIRCFNTPLQSSEMAGVKSVVQQKVPEGVNSLGLTFPGFICVHNMFLKKGRPETLWAVLRNFGYDNNLKLKDDFLPIPSKRAVDQSVELTGEAVEFLNGIFRLLDTDKDRALRPAEVDKLFCTAPESPWNDALYKDAAEINDMGYISLNGFLSQWALMTLLDPPCSLANLIYIGYSGNPAAALRVTRRRAVDRKKQATERNVFQCYVFGSKSSGKSALLDSLLGRPFSNNYIPSTVERFAVNAIELIGGARKTLVLREIPESKVPNVLSNKDSLAACDVAVFVYDSSDELSWKKSRDLLEKVARQGDLTGYRVPCLLIAAKDDLTPYPRAVQDSIKVTEELGIEAPIHVSMKLGDSSNVYNKIVHAAEHPHLSIPETEIGRKRKQYHRLLQHSLVFASVGTAMAVVGLAACRAYAVKKNSSG* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02161 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 594 IPR027417 -
Lapu1g02161 642 CDD Miro2 419 598 - -
Lapu1g02161 642 SMART rab_sub_5 12 177 - -
Lapu1g02161 642 SMART ras_sub_4 13 177 - -
Lapu1g02161 642 ProSiteProfiles Miro domain profile. 420 589 IPR020860 GO:0003924|GO:0005525
Lapu1g02161 642 PIRSF Miro 8 642 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Lapu1g02161 642 Pfam EF hand associated 349 416 IPR013566 -
Lapu1g02161 642 PRINTS Transforming protein P21 ras signature 113 126 - -
Lapu1g02161 642 PRINTS Transforming protein P21 ras signature 152 174 - -
Lapu1g02161 642 PRINTS Transforming protein P21 ras signature 12 33 - -
Lapu1g02161 642 Gene3D - 9 179 IPR027417 -
Lapu1g02161 642 FunFam Mitochondrial Rho GTPase 184 288 - -
Lapu1g02161 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 208 IPR027417 -
Lapu1g02161 642 Gene3D - 486 587 IPR027417 -
Lapu1g02161 642 Gene3D - 290 480 - -
Lapu1g02161 642 FunFam Mitochondrial Rho GTPase 290 480 - -
Lapu1g02161 642 FunFam Mitochondrial Rho GTPase 9 179 - -
Lapu1g02161 642 SMART rho_sub_3 14 177 IPR001806 GO:0003924|GO:0005525
Lapu1g02161 642 Pfam Ras family 13 174 IPR001806 GO:0003924|GO:0005525
Lapu1g02161 642 ProSiteProfiles Miro domain profile. 9 176 IPR020860 GO:0003924|GO:0005525
Lapu1g02161 642 PANTHER RHO FAMILY GTPASE 12 179 IPR003578 GO:0005525|GO:0007264
Lapu1g02161 642 Gene3D - 183 288 - -
Lapu1g02161 642 Pfam EF hand associated 227 311 IPR013567 -
Lapu1g02161 642 FunFam Mitochondrial Rho GTPase 487 588 - -
Lapu1g02161 642 SUPERFAMILY EF-hand 190 384 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02161 Lapu-Chr1 35977725 35986527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02161 2 640 EF-hand Containing Proteins AT3G63150 58.372 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02161 K07870 - gmx:100803790 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g02161 1 35977725 35986527 Lapu7g00688 7 8008393 8024301 PCT