LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu1g02150	ATGTGTTCTGTGTCCTCTGATACTAACGTCAAACAAAAGATAAGATGCAGAGCTATATCTAAACCACGAATCCAAGAATATTCAGACATATTTCAGGGTAGTCTAGCAACGTTAAAGTTGCGTGAGACTAATGTGGAGGATGACATAGAAGAGGAGCAAGACACTGGGGTTTTAGTGGCAAAAGAGATCAAGAAGAGAGTCGACACTATCAAATCAATATTGGGTTCACTGGAAGATGGAGAGATAACTGTGTCTGCTTATGACACTGCTTGGGTTGCTCTGGTAGAAGATGTTCATGAAAGTGGTACCCCTCAATTTCCATCAAGTCTAGAATGGATAGCAAAAAATCAACTTCCAGATGGATCATGGGGTGATAAGGAATTGTTTTCAGCTCATGATCGGATCATTAACACTTTGGCTTGTGTTATGGCATTAAAATCATGGAACATGCATCCTGAAAAGTGTGAAAAAGGAATGACATATTTTAAAGAGAATCTTAGCAAACTTCAGAATGAGAATGAGGAGCATATGCCTATTGGGTTTGAAGTAGCTTTCCCATCACTTCTTGACATGGCTCGTGGGTTGGACATAGAAGTGCCGGACAATTCCCCTATCCTGAACAAAATCTTTGCAATGAGAAACTTAAAACTCACAAGAATACCAAGAGAGATGATGCATAAAGTGCCCACAACTCTGCTTCATAGCTTGGAAGGGATGTCAGACCTGGACTGGAAATCACTTCTGAAACTGCAGGCTCAAGACGGATCCTTCTTGTTTTCTCCGGCCTCCACCGCCTTTGCTCTCATGCAAACCAAAGATCAAAATTGCTACAATTACTTGAATCAAGTGGTCAAGAAGTTCAATGGGGGAGTTCCAAACGTGTATCCAGTGGATTTGTTTGAACATATTTGGGTGGTTGATAGGCTGGAACGTCTAGGAATATCTCGGTATTTTCAGGAAGAGATCAAGGACTGTTTGAACTATGTTTATAGATATTGGACGGAAGATGGTATTTGCTGGGCAAGAAATTCAAATGTTCAAGACATTGATGACACAGCAATGGGTTTCAGATTACTGAGATTTCATGGCCACCAAGTTTCAGCGGATGTGTTTAAGCACTTTGAGAGGAACGGAGAATTCTTCTGTTTCAAAGGACAGTCAACGCAAGCAGTGACAGGAATGTTTAATCTGTTAAGGGCAAGTCAAGTAATGTTTCCAGGAGAGAAGATTCTAGAAGATGGAAAGAAGTTCTCTGGAAAATTTTTGAGGGAGAAGAGAGAAGCAAATGAGGTAGTGGATAAATGGATCATAATGAAAAACTTGGCAGGAGAGGTGACATACGCATTGGACATGCCATGGTATGCAAGTTTGCCTCGAGTGGAGACAAGATTCTACATTGATCAATACGGTGGTGAGAGTGACGTATGGATAGGCAAGACCCTCTACAGGATGGGCTATGTGAACAACGATACCTATCTGGAGCTTGCTAAATTAGATTACAACAATTGTCAGGCACTGCATCTAATAGAGTGGGGGAGAATTCAGAAGTGGTACTCAGAATCTAGATTGGGAGAATTTGGAATGAACAGAAGAACTCTTCTGTTGGCTTATTTTCTGGCAGCAGCAAACATATTTGAACCTGAAAAGTCTCATGTCAGGCTTGCTTGGGCCAAAACCTCAGTCTTACTTGAGACCATAACATCCTATGTTAGTGATGCAGAAATGAGGAAAGCTTTCATGAAAACATTCAGTGACTGCATTAGCAGGCGAGACTACTCCATTGGCTGGAGGTTGAACAGGAATAGAACTGGACATGGACTTGTTGAAACTTTGGTTGCCACCATAGATGAAATATCCTGGGATACACTTGTCTCTCACGGTCATGAAATTGGATATGATATGCACCGCAGTTGGGAAAAGTGGCTTTCAAGTTGGCACAGCCAAGGAGACAAATGTGAAGGACAAGGAGAGCTTTTGGCGCAGATCATAAACCTATGTGGCGGGCATTGGATTTCAGAGGATCAAATGTTCGATCCTCAGTATGAGACTCTCGTTCAGCTCACTAACACACTCTGCCATTCACTCAGTTCTCATCGAAAGGACAAGGATCTCGACAGCATGATCTCCCCAGAAGTTGAGTTGAAAATGCAAGAACTGGTGCAGTTGGTGTTGGAGAAATCTTCATCTCCCATTGACTTCAATATCAAGAATACTTTCCTCTCTGTGGCGAAGAGTTATTACTATACAGCTTTCTGTGATTCAAGAACCACCAACTTCCACATCGCCAAAGTTCTGTTCGATAAAGTCATTTAA	2313	0.4181	MCSVSSDTNVKQKIRCRAISKPRIQEYSDIFQGSLATLKLRETNVEDDIEEEQDTGVLVAKEIKKRVDTIKSILGSLEDGEITVSAYDTAWVALVEDVHESGTPQFPSSLEWIAKNQLPDGSWGDKELFSAHDRIINTLACVMALKSWNMHPEKCEKGMTYFKENLSKLQNENEEHMPIGFEVAFPSLLDMARGLDIEVPDNSPILNKIFAMRNLKLTRIPREMMHKVPTTLLHSLEGMSDLDWKSLLKLQAQDGSFLFSPASTAFALMQTKDQNCYNYLNQVVKKFNGGVPNVYPVDLFEHIWVVDRLERLGISRYFQEEIKDCLNYVYRYWTEDGICWARNSNVQDIDDTAMGFRLLRFHGHQVSADVFKHFERNGEFFCFKGQSTQAVTGMFNLLRASQVMFPGEKILEDGKKFSGKFLREKREANEVVDKWIIMKNLAGEVTYALDMPWYASLPRVETRFYIDQYGGESDVWIGKTLYRMGYVNNDTYLELAKLDYNNCQALHLIEWGRIQKWYSESRLGEFGMNRRTLLLAYFLAAANIFEPEKSHVRLAWAKTSVLLETITSYVSDAEMRKAFMKTFSDCISRRDYSIGWRLNRNRTGHGLVETLVATIDEISWDTLVSHGHEIGYDMHRSWEKWLSSWHSQGDKCEGQGELLAQIINLCGGHWISEDQMFDPQYETLVQLTNTLCHSLSSHRKDKDLDSMISPEVELKMQELVQLVLEKSSSPIDFNIKNTFLSVAKSYYYTAFCDSRTTNFHIAKVLFDKVI*	771

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu1g02150	770	Pfam	Terpene synthase family, metal binding domain	493	647	IPR005630	GO:0000287\|GO:0010333\|GO:0016829
	Lapu1g02150	770	FunFam	Ent-copalyl diphosphate synthase, chloroplastic	276	500	-	-
	Lapu1g02150	770	FunFam	Ent-copalyl diphosphate synthase	86	298	-	-
	Lapu1g02150	770	FunFam	Ent-copalyl diphosphate synthase, chloroplastic	503	770	-	-
	Lapu1g02150	770	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	254	474	IPR008930	-
	Lapu1g02150	770	SFLD	Terpene Cyclase Like 1 N-term - Enzymatic	59	483	-	-
	Lapu1g02150	770	Gene3D	Farnesyl Diphosphate Synthase	503	770	IPR008949	-
	Lapu1g02150	770	SUPERFAMILY	Terpenoid synthases	488	751	IPR008949	-
	Lapu1g02150	770	Coils	Coil	35	55	-	-
	Lapu1g02150	770	PANTHER	ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC	61	767	-	-
	Lapu1g02150	770	Gene3D	-	69	501	IPR036965	GO:0010333\|GO:0016829
	Lapu1g02150	770	Gene3D	-	86	298	-	-
	Lapu1g02150	770	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	86	269	IPR008930	-
	Lapu1g02150	770	Pfam	Terpene synthase, N-terminal domain	243	449	IPR001906	GO:0010333\|GO:0016829
	Lapu1g02150	770	SFLD	Terpene Cyclase Like 1 N-term	59	483	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu1g02150	Lapu-Chr1	35724398	35733176	Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu1g02150	K04120		-	gmx:100784193	1380.93

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu1g02150	1	35724398	35733176	Lapu1g02150	1	35724398	35733176	ECH