Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02135 ATGCTTGCAATAAGAAAGTTGAAAACAGGGCCTGATATCCCTTTGGTTTTAAGTGTCATGGTTGCTTATTGCAATTATAGAAGAGCCCAAGTTTCCAATGACAAAAGTATCCAGTATATTGTTAAGTCTGTTGTCTCTTGTTTAGCTAAATCAAGTAAATCAGCATTTCCACTGGGATCAGAGAATAGATTTACGCTTCAAGGACTATATTTCTCTAGTGTTGCTGAAAGAATCCTGGTCCAAGCTCAAGACCCTGCCAAAGTTAGTTTGGAGATACAAGATGCTCTCGATTCAAATCAATTAGATTATTCGTGGAAATTATTTGAGCAGCATTTGCACATGGCGGGGTTTCCCAGAAAATCTGTTATCAGTAAGCTTGTAACAAGTTATGTGGACAGCCTTGATATGAAATTGCTAGGAAAGGCTTATGAGTTAGTAGAACGTGCTATTGAGGAAGGTAAACAAGATTTGTTGGAAAAGGATGTGCTTATCTACCTCAGCCTTGGCCTTGCAAAAGCCAGACTACCAGTTCCAGCATCAACCATTTTAAGAAAGATGATAGATATGGAGCATTTTCCCCCAGCCACTGCCTGGTCTGCAGTTTTAGCACACATGTCACAAACAGCAGAAGGAAGTTACCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTGTTCCAGAACAATAGAGTAGATCCGCGTAAAAAGAGCAATGCACCTTTGATAGCCATGAAACCAAACAGCGCTGCTTTTAGCATTGCTTTGGCAGGGTGCCTCCTATTTGAGTCATCTAGGAAGGCAGAGCAGCTTCTTGATATGATGCCTCGAATTGGTGTCAAAGCAGATGCACACTTACTGATAATAATGGCACGTGTATATGAGAGAAATGGGCGAAGGGAAGAGCTCAAGAAGCTGCAAAGGCACATAGAGGAAGCCCCAAATCTAACTGATTTACAGTTTCGACATTTCTATAATTGTTTGTTGACATGCCATTTGAAATTTGGGGATCTAGATTGTGCATCAAACATGGTTTTGGAAATGCTTAGAAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGCCAAATTTATGAGAAATGCTGATGGAATTGATCATAACCATTCGCCTGGACTGGCTTCTGTGCATAGTTTGAACGACAGTAAAGATTTAGATAGTTTACAAAATAACAGGTCCGTTACTAGTGCTGTATTATCTTATGAGGGGTTCTCTAAAGATAGAAACTTCTCAAAGCTTGAGGCAGAGTCGAAAGCTATACTTGGTTCTTTATTATCTAAGTTGCAGATGCGGGTGGATTTGATCACAACCAAACATGGTATATTGCAGCCAACTGAAACAATTTATGTAAAATTAGTTAAAGCTATGCTAGAAGCTGGCAAGACCAAGGATTTAGCTGTGTTTCTTCTCAAGGCAGAAAGAGAAGATTCTCCATTTTCCAATGACAATTCAGCTTTGGTCCATGTTATTAACGCGTGCATCTCACTTGGATGGCTGGATCAAGCACATGATCTCCTGGATGAAATGCGTTTAGCCGGAGTTAGAACCGGTTCATCTGTATACTCCTCTCTTTTGAAAGCATATTGCCGAGCGAATAGGGTGGCAGATGTCACATCACTTCTGAGAGATGCTAAGATAGCTGGTATCCAGCTTGACTCAAGCTCCTATGAGGCAATGATCCAATCCAGAGTGCTCCAGCAAGACACACAGGGTGCACTTCAACTATTTAAAGAGAGGAAAGAAGCTAGAATTCCAAGAGTCACTCAACAAAACTCTGGCATGATGGCTAAAGATGAAGCGGAGACTGATGAAGCTAGGCTAATGACCAAGCTGTTGCAGGAAATCAAGGAAGGGCAGAGAGTGGATTGTGGAGTTCATGACTGGAATAATGTAATCCACTTTTTTTGCAAGAAGAAACTGATGCAAGATGCAGAAAAGGCTCTAAAGAAGATGAGAAGCTTAGGCCACTTGCCAAATGTGCAAACTTTCCATTCTATGGTCACAGGGTATGCTGCCACTGGAGGGAAATATCAAGAGGTGACAGAGCTGTGGGGTGAGATGAAAGCTCTTGCTTCTTCTATCTCCATGACGTTTGATCAGGAACTTCTTGATTCTGTGTTGTATACGTTTGTAAGGGGTGGATTCTTCGTTCGAGCCAATGAAGTCGTGACCATGATGGAAAAAGGAAACATGTTTGTTGACAAGTACAAGTACCGAATGCTATTCTTGAAATACCATAAATCACTTTACAAAGGAAAGGCTCCGAAATTTCAGACAGAATCCCAACTAAGCAAAAGAGAAGCAGCCCTGGCTTTTAAAAGGTGGATAGGCTTGACTTGA 2355 0.4115 MLAIRKLKTGPDIPLVLSVMVAYCNYRRAQVSNDKSIQYIVKSVVSCLAKSSKSAFPLGSENRFTLQGLYFSSVAERILVQAQDPAKVSLEIQDALDSNQLDYSWKLFEQHLHMAGFPRKSVISKLVTSYVDSLDMKLLGKAYELVERAIEEGKQDLLEKDVLIYLSLGLAKARLPVPASTILRKMIDMEHFPPATAWSAVLAHMSQTAEGSYLAAELILEIGYLFQNNRVDPRKKSNAPLIAMKPNSAAFSIALAGCLLFESSRKAEQLLDMMPRIGVKADAHLLIIMARVYERNGRREELKKLQRHIEEAPNLTDLQFRHFYNCLLTCHLKFGDLDCASNMVLEMLRKAKEARNSLAAAKFMRNADGIDHNHSPGLASVHSLNDSKDLDSLQNNRSVTSAVLSYEGFSKDRNFSKLEAESKAILGSLLSKLQMRVDLITTKHGILQPTETIYVKLVKAMLEAGKTKDLAVFLLKAEREDSPFSNDNSALVHVINACISLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCRANRVADVTSLLRDAKIAGIQLDSSSYEAMIQSRVLQQDTQGALQLFKERKEARIPRVTQQNSGMMAKDEAETDEARLMTKLLQEIKEGQRVDCGVHDWNNVIHFFCKKKLMQDAEKALKKMRSLGHLPNVQTFHSMVTGYAATGGKYQEVTELWGEMKALASSISMTFDQELLDSVLYTFVRGGFFVRANEVVTMMEKGNMFVDKYKYRMLFLKYHKSLYKGKAPKFQTESQLSKREAALAFKRWIGLT* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02135 784 Gene3D Tetratricopeptide repeat domain 384 573 IPR011990 GO:0005515
Lapu1g02135 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Lapu1g02135 784 Pfam PPR repeat 324 350 IPR002885 -
Lapu1g02135 784 Pfam PPR repeat 494 519 IPR002885 -
Lapu1g02135 784 PANTHER BNAC05G43320D PROTEIN 24 783 - -
Lapu1g02135 784 Pfam PPR repeat family 631 676 IPR002885 -
Lapu1g02135 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Lapu1g02135 784 Pfam Pentatricopeptide repeat domain 544 589 IPR002885 -
Lapu1g02135 784 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Lapu1g02135 784 NCBIfam pentatricopeptide repeat 525 557 IPR002885 -
Lapu1g02135 784 Gene3D Tetratricopeptide repeat domain 593 779 IPR011990 GO:0005515
Lapu1g02135 784 Gene3D Tetratricopeptide repeat domain 235 378 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02135 Lapu-Chr1 35500380 35504038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02135 525 753 Miscellaneous Gene Families AT4G11690 20.690 2.58e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02135 - - gmx:102661989 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g02135 1 35500380 35504038 Lapu1g02135 1 35500380 35504038 ECH