Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01447 ATGGAGGTTGTTTCGCAGCCTCTGTGCACCATTCTTATCGCCCCGCGCAAACACTCTCTTCTCATTCCGCAACAAATCCCCAATCCTTCTAAACACTTTCCCTTCTTATCTGTTCGCTCTACCACTCTCTCCTCTTCATCGCGTTTTTCTCCACCGTCTCTTTTGTTCGCAGCGCCGGAGAACCAATTGAGTGTCGGTGAAGGAGAGAACACCGATGCAAGTGAATGGGCACTGCAGGATTTTTATTCCATGAGGAGGGATGTTGAAATTATGTCACTACGTGTTGAAGAGATTAGAGAATCTTCTGGTCTACAACTATTGGAGCAAGAACTTGCCAACTTGGAGGAGCAAGCAGCTGATAGCTGTTTCTGGGACGATAGGGCCAAAGCTCAAAAGACTCTTTCGACCTTGGCTGATGTCAAAGATAAGATAAAATTACTCAATGATTTCAAAACCCAGGTTGAGGATGCAGAAACAATAGTTAAGCTGACTGAGGAAATGGAATCCATTGATAGAGGGCTTTTTGATGAGGCTTCCAATCTTATTAAAGAACTGAATAAATCTCTAGATCGATATGAGCTGACTCAACTTCTCTCTGGTCCTTATGATAAAGAAGGTGCTGTTATCTCTATTACAGCAGGTGCTGGTGGTACTGATGCCCAGGATTGGGCAGACATGCTTCTTAGGATGTACATGAGATGGGGTGAGAAACAGAGATACAAGACCAGAGTTATTGAGAAATCCCCCGGAGAAGAAGCTGGAATTAAATCTGCCACTGTTGAAGTTGAAGGTCGTTATGCATATGGGTATTTGTCTGGAGAGAAAGGAACGCATCGCATTGTTCGTCAATCACCTTTTAATGCCAAAGGCCTTCGTCAGACAAGCTTTTCTGGTGTTGAGGTCATGCCTCTTCTTCCGGAGGAATCTATGGATGTTGAAATTCCCGAGGAGGACCTGGAAATTAGTTTTTCTAGAGCAGGTGGAAAGGGAGGTCAGAATGTGAACAAGGTTGAAACTGCAGTTCGGATTACACACATTCCAACTGGTGTCACTGTTCGCTGCACAGAGGAGAGATCTCAACTGTCGAATAAGATCAGAGCTTTAAGCCGTTTGAAAGCCAAGTTGTTGGTTATAGCTGAGGAGCAACGTGCATCAGAAATTAAGCAGATTCGAGGTGACGCAGTCAAGGCTGAATGGGGGCAACAAATACGGAACTATGTATTCCATCCATACAAACTAGTTAAAGATGTACGAACAGGGTATGAAACGACAGACGTCATCTCTGTAATGGATGGCGAGTTGGATCCCTTCATCAAATCTTACCTCAAACACAAGTTCAATATGTCACTGTCTGCAAGTGGGGTTAACTAA 1371 0.442 MEVVSQPLCTILIAPRKHSLLIPQQIPNPSKHFPFLSVRSTTLSSSSRFSPPSLLFAAPENQLSVGEGENTDASEWALQDFYSMRRDVEIMSLRVEEIRESSGLQLLEQELANLEEQAADSCFWDDRAKAQKTLSTLADVKDKIKLLNDFKTQVEDAETIVKLTEEMESIDRGLFDEASNLIKELNKSLDRYELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTRVIEKSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLSNKIRALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETTDVISVMDGELDPFIKSYLKHKFNMSLSASGVN* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01447 456 SUPERFAMILY Release factor 107 447 IPR045853 -
Lapu1g01447 456 Coils Coil 97 117 - -
Lapu1g01447 456 Hamap Peptide chain release factor 2 [prfB]. 80 446 IPR004374 GO:0005737|GO:0006415|GO:0016149
Lapu1g01447 456 SMART PCRF_a_2 162 274 IPR005139 GO:0006415
Lapu1g01447 456 Pfam PCRF domain 107 299 IPR005139 GO:0006415
Lapu1g01447 456 Coils Coil 175 195 - -
Lapu1g01447 456 Gene3D - 209 439 - -
Lapu1g01447 456 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 325 341 IPR000352 GO:0003747|GO:0006415
Lapu1g01447 456 Gene3D Release factor 87 202 - -
Lapu1g01447 456 Gene3D - 305 401 - -
Lapu1g01447 456 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 79 445 - -
Lapu1g01447 456 NCBIfam peptide chain release factor 2 92 443 IPR004374 GO:0005737|GO:0006415|GO:0016149
Lapu1g01447 456 Pfam RF-1 domain 309 418 IPR000352 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01447 Lapu-Chr1 27330077 27336425 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01447 K02836 - gmx:100775574 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01447 1 27330077 27336425 Lapu1g01447 1 27330077 27336425 ECH