Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00597 ATGGACAAGCTAAGCCAATATGAACGTGTATTCAACCACTTTGACGGGAATGGCGACGGCAAGATATCGCCGTCGGAGCTGCAACAATGCGTGGAGGCCATGGGCGAGGCGTTGTCGGCTGAGGATGCGGCGGCGACTGTGACTATGCTGGATGCGGACGGGGATGGATTGGTGGGGTTTGATGATTTTGTGAGGTTTGTGGAGGGAGGGAAAGAGGAAGAGAAAGAAAATGACCTAAGAGAGGCTTTTAAGATGTATGAGATGGATGAGAGTGGTTGCATCACACCCAAGAGTCTTAAAAGAATGCTTAGTAGGTTGGGTGAATCTAGGAGCATAGATGAGTGTGAAGTTATGATAGCTAGATTTGATCTTGATGGAGATGGGGTGCTCACTTTTCATGAATTTAAGGTGAAGTTACTT 420 0.4738 MDKLSQYERVFNHFDGNGDGKISPSELQQCVEAMGEALSAEDAAATVTMLDADGDGLVGFDDFVRFVEGGKEEEKENDLREAFKMYEMDESGCITPKSLKRMLSRLGESRSIDECEVMIARFDLDGDGVLTFHEFKVKLL 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00597 140 SUPERFAMILY EF-hand 4 138 IPR011992 -
Lapu1g00597 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 77 136 - -
Lapu1g00597 140 CDD EFh 6 67 IPR002048 GO:0005509
Lapu1g00597 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Lapu1g00597 140 FunFam Calcium-binding protein CML38 71 140 - -
Lapu1g00597 140 Gene3D - 70 140 - -
Lapu1g00597 140 Gene3D - 1 69 - -
Lapu1g00597 140 SMART efh_1 6 34 IPR002048 GO:0005509
Lapu1g00597 140 SMART efh_1 114 140 IPR002048 GO:0005509
Lapu1g00597 140 SMART efh_1 78 106 IPR002048 GO:0005509
Lapu1g00597 140 SMART efh_1 42 70 IPR002048 GO:0005509
Lapu1g00597 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Lapu1g00597 140 CDD EFh 78 135 IPR002048 GO:0005509
Lapu1g00597 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Lapu1g00597 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Lapu1g00597 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Lapu1g00597 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Lapu1g00597 140 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Lapu1g00597 140 Pfam EF-hand domain pair 76 136 IPR002048 GO:0005509
Lapu1g00597 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Lapu1g00597 140 FunFam Putative calcium-binding protein CML19 2 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00597 Lapu-Chr1 18302975 18303514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00597 2 137 EF-hand Containing Proteins AT1G76650 49.265 5.97e-43 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00597 K13448 - gmx:100784553 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00597 1 18302975 18303514 Lapu1g00597 1 18302975 18303514 ECH