Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00595 ATGGCTGTGACTCCCAAAATTGCTCCTTCCATGCTCTCTTCCGACTTCGCCAATTTGGCTTCCGAGGCTCAGCGCATGCTCGACTTTGGCGCCGATTGGCTCCACATGGACATCATGGATGGGCATTTTGTCCCCAATTTAACTATTGGCGCTCCAGTTATTGAAAGTTTGAGAAAGCACACAGAGGCATATTTGGATTGCCACCTTATGGTTACAAATCCTCTCGATTATGTTGAGCCCTTGGCAAAAGCTGGTGCTTCTGGTTTTACATTTCATGTAGAGACATCGAAAAATGAATGGAAAGAACTTATCCAAAGAATTAAGTCACACGGCATGAGGCCTGGGGTATCATTAAAGCCTGGGACCCCCATTGAACATGTTTTTCCTCTGGTGGAAGCTGAAAATCCTGTGGAAATGGTTCTTGTGATGACCGTAGAACCTGGATTTGGAGGACAAAAATTTATGCCAGAGATGATGGATAAAGTACGTATACTTAGGAAGAAGTATCCATCGCTTGACATTGAGGTGGATGGTGGTTTAGGGACTTCAACCATAGAGGTGGCTGCATCGGCAGGGGCAAATTGCATTGTTGCTGGAAGTTCGGTGTTTGGTGCCCCGGAACCAGCTCAAGTAATATCCTTGCTGAGGAATTCTGTTGAGAAAGCCCAGCAAACCGTGATTCAGTAA 687 0.4585 MAVTPKIAPSMLSSDFANLASEAQRMLDFGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTEAYLDCHLMVTNPLDYVEPLAKAGASGFTFHVETSKNEWKELIQRIKSHGMRPGVSLKPGTPIEHVFPLVEAENPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKKYPSLDIEVDGGLGTSTIEVAASAGANCIVAGSSVFGAPEPAQVISLLRNSVEKAQQTVIQ* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00595 228 FunFam Ribulose-phosphate 3-epimerase 1 226 - -
Lapu1g00595 228 SUPERFAMILY Ribulose-phoshate binding barrel 5 221 IPR011060 -
Lapu1g00595 228 NCBIfam ribulose-phosphate 3-epimerase 6 216 IPR026019 GO:0004750|GO:0006098
Lapu1g00595 228 Coils Coil 212 228 - -
Lapu1g00595 228 CDD RPE 6 216 IPR000056 GO:0005975|GO:0016857
Lapu1g00595 228 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 5 224 IPR000056 GO:0005975|GO:0016857
Lapu1g00595 228 Pfam Ribulose-phosphate 3 epimerase family 6 203 IPR000056 GO:0005975|GO:0016857
Lapu1g00595 228 Hamap Ribulose-phosphate 3-epimerase [rpe]. 4 218 IPR026019 GO:0004750|GO:0006098
Lapu1g00595 228 PIRSF RPE 1 227 IPR026019 GO:0004750|GO:0006098
Lapu1g00595 228 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 34 48 IPR000056 GO:0005975|GO:0016857
Lapu1g00595 228 Gene3D Aldolase class I 1 226 IPR013785 -
Lapu1g00595 228 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 140 162 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00595 Lapu-Chr1 18274045 18284107 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00595 K01783 - gmx:100500085 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00595 1 18274045 18284107 Lapu1g00595 1 18274045 18284107 ECH