Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00585 ATGACCAGCAAAAAAACATTACCTGTCTCAACCGTTGTTAGTGGCTTTTGTTTCAGTCATAGTGCGCAAAAGATGAGAGTTCTGGAGTTATCACCCTCAGGTGGCAATGGTTCATCTACTAATGAAGATGAACCTTTACCTCAGGATGCAGATTATAGTAATATTAGTGACGAGCTAGAGACTTCAATCTTGGCAAGATTGCCAAGGTCACAGCAGTGGAAATTGTGCTTTCTAAACAAGCGGTTCTTGGAGCTAGCGAGGAGTGGCGAGATCTACAAAATCAGGAAAGAGATAGGACTGAAGGAACCATCTGTGTTCATGTTAGCTAGTGGGGAGAGCAATTGGTGGGCAATGGAGTGGCCTTTCATGTCAAGCAGAAAGCTCCCTCCTATTCAATCAGATTATAATTTTGAGTTTGGAGACAAGGAGTCATTTTGTGCAGGATCCCACCTATTTGTCTTTGGCAAGGAGATTGATGGGGCTGTAACTTGGAGGTTTGATTCAACAAATAATGAATGGCTCAAAGGGCCGTCTATGATCAACCCAAGGTGTCTTTTTGCATCAGCCACATCTGGTGGTATTGCTTTTGTTGCTGGGGGTCGTGATGCAACAACTTACTCCGAAGTTTTGGATTCTGCTGAGAAGTACAACTCTGAAAGCCAGTGTTGGAAACCCCTTCCAAGGATGAACAAAAGGAGGAGGTTTTGCTCAGGTTGCTTCATGGATAACAAGTTCTATGTCATTGGAGGGCAAGATGAACATGGGAGGGACCTCACTTGTGGAGAATTCTTCGATGGGAAGACAAACAGTTGGAACTTGATTCCTGACATGTGGAAGGATATTCCTCCTTTTGCATCACAGTCTCCACCGCTTCTTGCTGTTGTCAACAACGAGTTGTACACACTGGATGCTTCTTCAAATGAGCTGAAAGTGTACATGAAGGGAAGCAATTCATGGAAGACTTTGGGAGTGGTTCCTGTGAGAGCTGATGCACAAAGAGGTTGGGGTGTGGCTTTTAAATCTCTTGGTGATGAGTTGCTTGTGATTGGTGCACCTTCTGTGTCACACACAGAGCGAGCCATGTGTATGTACACTGGTTGTCCTGATCCTGCTGATGACAAATTCAGGTGGAGGCAAATTGGATGTGGCAGCATTCAGCTCAATCACTTTATCCGCAATTGTGCTGTGATGTGGACCTGA 1200 0.4483 MTSKKTLPVSTVVSGFCFSHSAQKMRVLELSPSGGNGSSTNEDEPLPQDADYSNISDELETSILARLPRSQQWKLCFLNKRFLELARSGEIYKIRKEIGLKEPSVFMLASGESNWWAMEWPFMSSRKLPPIQSDYNFEFGDKESFCAGSHLFVFGKEIDGAVTWRFDSTNNEWLKGPSMINPRCLFASATSGGIAFVAGGRDATTYSEVLDSAEKYNSESQCWKPLPRMNKRRRFCSGCFMDNKFYVIGGQDEHGRDLTCGEFFDGKTNSWNLIPDMWKDIPPFASQSPPLLAVVNNELYTLDASSNELKVYMKGSNSWKTLGVVPVRADAQRGWGVAFKSLGDELLVIGAPSVSHTERAMCMYTGCPDPADDKFRWRQIGCGSIQLNHFIRNCAVMWT* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00585 399 Pfam Kelch motif 232 277 IPR006652 GO:0005515
Lapu1g00585 399 Pfam Kelch motif 182 230 IPR006652 GO:0005515
Lapu1g00585 399 SUPERFAMILY Kelch motif 144 373 IPR015915 GO:0005515
Lapu1g00585 399 FunFam F-box/kelch-repeat protein SKIP11 97 382 - -
Lapu1g00585 399 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 53 397 - -
Lapu1g00585 399 MobiDBLite consensus disorder prediction 29 52 - -
Lapu1g00585 399 MobiDBLite consensus disorder prediction 32 47 - -
Lapu1g00585 399 SMART kelc_smart 150 193 IPR006652 GO:0005515
Lapu1g00585 399 SMART kelc_smart 194 243 IPR006652 GO:0005515
Lapu1g00585 399 SMART kelc_smart 244 297 IPR006652 GO:0005515
Lapu1g00585 399 Gene3D - 91 381 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00585 Lapu-Chr1 18123273 18124482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00585 47 274 Miscellaneous Gene Families AT4G33900 25.738 1.51e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00585 - - gmx:100777338 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00585 1 18123273 18124482 Lapu1g00585 1 18123273 18124482 ECH