Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00524 ATGATGAATTATTTCCCCGACGAGGTAATAGAGCACATATTTGACTATGTCGCGTCTCACCGTGACCGGAACGCTTTGTCTTTGGTGTGTAAAAGTTGGTACAGGATAGAGAGGTGTACGAGGCAGAGGGTGTTCATAGGAAACTGTTACTCTATCACTCCGGAGAGGTTGATCCAAAGGTTTCCTGGTCTAAAGTCTTTGACTTTGAAGGGAAAGCCTCATTTTGCGGACTTCAGTCTGGTTCCTTACGGTTGGGGTGGCTTTGTGTATCCATGGATTGAGGCACTGGCCAAGAGCAGAGTTGGGTTGGAGGAGCTTAGGCTCAAGAGGATGGTGGTCTCGGATGAGAGCCTGGAGCTACTTTCTCGTTCTTTCACAAACTTTAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTCACCACCGATGGCCTTGCTGCCGTAGCTGCAAATTGCAGGTATCTTAGGGAGCTGGATCTGCAAGAAAACGAAGTTGAAGATCACAAAGGGCAGTGGCTAAGTTGCTTTCCTGATAGCTGTACATCGCTTGTCTCTCTTAATTTTGCTTGCCTTAAAGGAGAGGTTAGTTTGGGAGCTCTAGAGAGACTTGTGGCCAGATCTCCCAACCTGAAGAGTTTGAAGTTGAATCGTTCAGTTCCCCTTGATGCCCTGCAAAGGATAATGACGCGAGCACCTCAACTAGCGGATTTGGGAATTGGATCATTTGTCCATGATCCGGAATCGGAGGCATACATAAAGCTTAAGAACACCATTCTCAAGTGCAAGTCCATAACCAGTTTGTCAGGGCTTTTGGAAGTTGCTCCCCACTGTCTTGCAGCTATATACCCTATTTGCCCCAATTTAACATCCTTAAACCTGAGCTATGCAGCAGGCATTCAGGGCAGTGATCTGATAAAACTAATTCGCCATTGTGTGAAACTTCAGCGATTATGGATAATGGATTGCATTGGAGACAAAGGACTTGGTGTTGTAGCCAAGACATGCACAGATTTGCAAGAATTGAGGGTGTTTCCATCTGTTCCCTTTGGAAATCCAGCAGCTGTGACGGAAGTAGGACTTGTTGCAATATCAATGGGATGCCCTAAGCTTCACTCATTACTCTACTTCTGCCACCAGATGACAAATGCTGCACTCATTACAGTGGCTAAGAACTGCCCGAATTTTATCCGCTTCAGATTGTGCATCCTTGATGCAACAAAACCTGACCCTGATACAATGCAGCCACTGGACGAAGGTTTCGGTGCAATTGTGCAGTCTTGCAGGCGACTAAGGCGCCTATCACTCTCAGGGCAATTGACTGACCAGGTTTTCCTTTACATTGGAATGTATGCTGAGAAGCTTCAAATGCTGTCCATTGCATTTGCTGGGGACAGTGACAAGGGAATGCTGTATGTGTTGAATGGATGCAAGAAACTGAGGAAGCTTGAGATTAGAGATTGCCCTTTCGGAGACATGGCACTTCTGACGGACGTAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCGTGCGAAGTGACTGTGGGAGCCTGTAAGTTGCTAGCCAAGAAGATGCCAAGGTTGAATGTGGAGATCTTCAATGAAAATGAGCAAGAAGATTGTAGTCTGGAAGATGGGCAGAGGGTAGAGAAGATGTATTTGTATCGTACATTGGCTGGGAAAAGGAAAGATGCACCAGAATATGTATGGACTCTCTAG 1719 0.4613 MMNYFPDEVIEHIFDYVASHRDRNALSLVCKSWYRIERCTRQRVFIGNCYSITPERLIQRFPGLKSLTLKGKPHFADFSLVPYGWGGFVYPWIEALAKSRVGLEELRLKRMVVSDESLELLSRSFTNFKSLVLVSCEGFTTDGLAAVAANCRYLRELDLQENEVEDHKGQWLSCFPDSCTSLVSLNFACLKGEVSLGALERLVARSPNLKSLKLNRSVPLDALQRIMTRAPQLADLGIGSFVHDPESEAYIKLKNTILKCKSITSLSGLLEVAPHCLAAIYPICPNLTSLNLSYAAGIQGSDLIKLIRHCVKLQRLWIMDCIGDKGLGVVAKTCTDLQELRVFPSVPFGNPAAVTEVGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCRRLRRLSLSGQLTDQVFLYIGMYAEKLQMLSIAFAGDSDKGMLYVLNGCKKLRKLEIRDCPFGDMALLTDVGKYETMRSLWMSSCEVTVGACKLLAKKMPRLNVEIFNENEQEDCSLEDGQRVEKMYLYRTLAGKRKDAPEYVWTL* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00524 572 Gene3D Ribonuclease Inhibitor 42 572 IPR032675 -
Lapu1g00524 572 Gene3D - 1 41 - -
Lapu1g00524 572 SMART LRR_CC_2 100 124 IPR006553 -
Lapu1g00524 572 SMART LRR_CC_2 366 390 IPR006553 -
Lapu1g00524 572 SMART LRR_CC_2 125 150 IPR006553 -
Lapu1g00524 572 SMART LRR_CC_2 284 309 IPR006553 -
Lapu1g00524 572 SMART LRR_CC_2 426 449 IPR006553 -
Lapu1g00524 572 SMART LRR_CC_2 475 500 IPR006553 -
Lapu1g00524 572 FunFam Transport inhibitor response 1 1 41 - -
Lapu1g00524 572 Pfam Transport inhibitor response 1 protein domain 62 108 IPR041101 -
Lapu1g00524 572 SUPERFAMILY RNI-like 421 532 - -
Lapu1g00524 572 SMART fbox_2 5 44 IPR001810 GO:0005515
Lapu1g00524 572 CDD F-box_AtTIR1-like 2 41 - -
Lapu1g00524 572 SUPERFAMILY RNI-like 17 435 - -
Lapu1g00524 572 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 93 531 - -
Lapu1g00524 572 Pfam F-box 3 42 IPR041567 -
Lapu1g00524 572 FunFam Transport inhibitor response 1 42 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00524 Lapu-Chr1 16891293 16895599 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00524 - - gmx:100812516 1108.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00524 1 16891293 16895599 Lapu1g00524 1 16891293 16895599 ECH