Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00488 ATGAAGAAGGCGTCACCTGTGACCATGGATCACGTGCTTCTGGCGTCGCAGGAGACGAAGGAGGCGCGTGAGGTGCGGATTCGAAGCCTCTTCGAATTCTTCGACGGAGAGAATCGCGGGTTCTTGGACTACGCGCACATCGAGGCGGGTCTATCGGCGCTTCAGATTCCGTCGGAGTACAAGTACGCGAAGGATTTGTTGAACGCTTGCGATGAGAACAAGGATGGGAGAGTGGATTTCCAAGAGTTCAAGAGGTACATGGACGACAAGGAGTTGGAGATTTACCGCATTTTTCAGGCCATCGATGTTGCGCACAATGGCTGCATTTTGCCCGAGGAGCTTTGGGAGGCTCTCGTTAAAGCAGGGATTAAGATTGATGATGAGGAACTCGCCCGTTTTGTTGAGCATGTTGATAAGGATAATAATGGTGTTATAGCATTTGATGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCAACCATCGAGAACATTTACCATTATTTGGAGCGGATATGTATGGTTGATATTGGGGAACAGTCTGTTATTCCGGCAGGCATTAGCCAGCACATTCATGCCAGTAGGTATCTGATTGCAGGAGGAGTAGCAGGTGCTACATCACGCACAGCAACTGCGCCACTTGATCGTCTAAAGGTTGTATTGCAAGTCCAAACAACACGAGTTCACATAATGCCTGCAATAAAAGCTATATGGAAAGAGGGTGGTCTGTTAGGATTTTTCCGAGGGAATGGTTTAAATGTTCTTAAGGTTGCCCCTGAGAGTGCCATTAGATTTTACAGCTATGAGATGTTGAAGACCTTCATTGCAAAGGCCAAAGGGGAAGAGGCAAAGGCTGATATTGGAGGTATGGGGAGGCTACTAGCTGGTGGTATTGCTGGTGCTATAGCTCAAACTGCAATATATCCGATGGATCTTGTTAAAACACGACTACAAACCTATGCTTGTGAAAGTAGAAGAATTCCTAGTCTTGGAACCCTTTCAAAAGACATTTGGCTTCAGGAAGGACCCCGGGCATTTTATAGGGGATTGATTCCTTCTCTTCTTGGGATTATCCCTTATGCTGGCATAGATCTTGCTGCGTATGAAACTTTGAAGGATATGTCCAAGCAGTATATTCTTCATGAAGGAGATCCTGGCCCTCTAGTTCAATTAGGATGTGGGACTGTATCTGGAGCTCTTGGGGCAACATGCGTTTACCCACTACAGGTGGTTAGAACAAGGATGCAGGCTCAACGATCTTATCAGGGAATGGCTGATGTATTCAGGAAAACCTTGGAAAATGAAGGCTTTAGGGGATTCTACAAAGGAATATTTCCTAACTTACTCAAGGTTGTACCGTCAGCAAGCATCACCTACATGGTTTATGAGAGTATGAAAAAAAGTTTGCATTTGGAGTGA 1422 0.4578 MKKASPVTMDHVLLASQETKEAREVRIRSLFEFFDGENRGFLDYAHIEAGLSALQIPSEYKYAKDLLNACDENKDGRVDFQEFKRYMDDKELEIYRIFQAIDVAHNGCILPEELWEALVKAGIKIDDEELARFVEHVDKDNNGVIAFDEWRDFLLLYPHEATIENIYHYLERICMVDIGEQSVIPAGISQHIHASRYLIAGGVAGATSRTATAPLDRLKVVLQVQTTRVHIMPAIKAIWKEGGLLGFFRGNGLNVLKVAPESAIRFYSYEMLKTFIAKAKGEEAKADIGGMGRLLAGGIAGAIAQTAIYPMDLVKTRLQTYACESRRIPSLGTLSKDIWLQEGPRAFYRGLIPSLLGIIPYAGIDLAAYETLKDMSKQYILHEGDPGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRSYQGMADVFRKTLENEGFRGFYKGIFPNLLKVVPSASITYMVYESMKKSLHLE* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00488 473 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Lapu1g00488 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 192 275 IPR018108 -
Lapu1g00488 473 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Lapu1g00488 473 PRINTS Mitochondrial carrier protein signature 210 224 IPR002067 GO:0055085
Lapu1g00488 473 PRINTS Mitochondrial carrier protein signature 303 321 IPR002067 GO:0055085
Lapu1g00488 473 PRINTS Mitochondrial carrier protein signature 348 366 IPR002067 GO:0055085
Lapu1g00488 473 PRINTS Mitochondrial carrier protein signature 250 270 IPR002067 GO:0055085
Lapu1g00488 473 PRINTS Mitochondrial carrier protein signature 197 210 IPR002067 GO:0055085
Lapu1g00488 473 PRINTS Mitochondrial carrier protein signature 395 417 IPR002067 GO:0055085
Lapu1g00488 473 ProSiteProfiles EF-hand calcium-binding domain profile. 96 124 IPR002048 GO:0005509
Lapu1g00488 473 SMART efh_1 26 54 IPR002048 GO:0005509
Lapu1g00488 473 SMART efh_1 93 121 IPR002048 GO:0005509
Lapu1g00488 473 SMART efh_1 129 157 IPR002048 GO:0005509
Lapu1g00488 473 SMART efh_1 62 90 IPR002048 GO:0005509
Lapu1g00488 473 SUPERFAMILY EF-hand 21 193 IPR011992 -
Lapu1g00488 473 SUPERFAMILY Mitochondrial carrier 191 464 IPR023395 -
Lapu1g00488 473 Pfam EF-hand domain pair 93 151 IPR002048 GO:0005509
Lapu1g00488 473 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Lapu1g00488 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 288 375 IPR018108 -
Lapu1g00488 473 Gene3D - 25 103 - -
Lapu1g00488 473 Pfam EF hand 64 85 IPR002048 GO:0005509
Lapu1g00488 473 Gene3D - 105 180 - -
Lapu1g00488 473 PANTHER SOLUTE CARRIER FAMILY 25 150 471 - -
Lapu1g00488 473 Gene3D Mitochondrial carrier domain 188 471 IPR023395 -
Lapu1g00488 473 FunFam Mitochondrial substrate carrier family protein 188 471 - -
Lapu1g00488 473 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 105 180 - -
Lapu1g00488 473 FunFam Mitochondrial substrate carrier family protein 1 92 - -
Lapu1g00488 473 Pfam Mitochondrial carrier protein 291 376 IPR018108 -
Lapu1g00488 473 Pfam Mitochondrial carrier protein 387 470 IPR018108 -
Lapu1g00488 473 Pfam Mitochondrial carrier protein 191 279 IPR018108 -
Lapu1g00488 473 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Lapu1g00488 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 386 469 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00488 Lapu-Chr1 16169341 16172877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00488 1 473 EF-hand Containing Proteins AT5G51050 72.152 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00488 K14684 - gmx:100775805 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00488 1 16169341 16172877 Lapu1g00488 1 16169341 16172877 ECH