Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00483 ATGGCTTCTTCTTCATCTCTCCTCCCGAGGCCACACCTTCCCACACCCCTCATCTCCAAACTCAACTCTTCCCCCACAACGTGGAGTCTCTTCATCCTCACACGCCCTGCACACCTCAGACACGGAAACAAGCAAAAGCTGCCATCTTTCCCCATCAATGCAGTGTACACTCCCCATAGCCCCTACACCCATTCCACACCCTCCAAAACTGAACCCCGCAATGACCCCATTTCCCTCCTCAACGAGAGGATTCGCCGCGAGTACAGCAAGAAAGAGGTTTTCAGAACGGTGATGAACTCAGAGGAAGCGGGGAAGTACATGCGAATGGTGAAGGAGCAACAGCAGAAGGGGTTGCAGAAGTTGAAGGGCGATAGGGAGAGCAAAAATGGGGTCTTTAGCTACAGGGTCGACCCTTACACGCTCCGTTCTGGGGACTATGTTGTGCACAAGAAAGTGGGGATTGGGAGGTTTGTTGGGATTCGGTTTGATTCTGCTAAGAATTCTTCACAAGCCACTGAGTATGTTTTCATCGAGTATGCTGATGGCATGGCAAAACTACCTGTCAACCAGGCTTCCAAAATGCTCTATAGATATAGTCTGCCAAATGAAACCAAGAAGCCAAGGACATTGAGCAAGTTGAATGATACTGGTGCGTGGGAGAGAAGAAAGGTTAAAGGTAAGGTCGCAATACAGAAGATGGTTGTGGACCTGATGGAACTCTATCTGCACAGGCTTAAGCAAAGAAGACCTACATATCTAAGGACTCCTGCCTTGGCTGAATTTGAAGCTCAGTTCCCTTATGAACCCACACCAGATCAGAAACAGGCATTTATTGATGTTGAGAGGGATTTGACGGAGCAAGAAACACCAATGGACAGATTAATTTGTGGAGATGTAGGTTTTGGTAAAACTGAGGTTGCAATACGTGCTATCTTTTGTGTTGTCTCAGCTAAAAAACAAGCAATGGTTCTGGCACCAACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATACCCTGATGTCAAGGTTGGGCTACTAAGCAGGTTCCAGACCAAAGCTGAGAAAGAAGAGAATTTGGACATGATTAAGAATGGTAGCCTGGATATTATAGTTGGGACTCATTCACTCCTAGGAGATCGTGTTACATATAACAATCTTGGTCTGCTTGTGGTTGATGAGGAGCAGAGGTTTGGTGTCAAACAGAAGGAGAAGATTGCTTCTTTTAAAACTTCTGTGGATGTACTTACTTTGTCTGCAACCCCTATACCACGAACTCTTTATTTAGCATTAACAGGGTTTCGTGATGCCAGTTTAATATCAACACCACCTCCGGAAAGAGTTCCTATCAAGACTCACCTTTCTTCATACAGTGAGGAGAAAGTAATTTCAGCCATCAAGTATGAGCTGGATCGTGGTGGTCAAGTTTTTTATGTTCTGCCACGTATTAAGGGACTGGACGAAGTAATGGCATTTCTTGTAGAGTCATTTCCAAATGTGGAAATAGCCATTGCCCATGGGAAGCTGTTCTCAAAGCAATTAGAGGATACAATGGAGAAGTTTGCTCTAGGTGAAATAAAAATCCTTATCTGCACAAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCAAATACCATTATCATTCAGGATGTTCAGCAATTTGGTCTTGCACAGTTATACCAGTTGCGTGGAAGGGTTGGACGAGCAGATAAGGAAGCACATGCATACCTATTTTACCCTGACAAAGGCCTGCTTTCTGACCAAGCATTGGAGAGGCTTGCTGCTATTGAAGAATGTCGTGAACTTGGTCAAGGCTTCCAACTAGCTGAGAAAGACATGGGTATAAGAGGTTTTGGTGCAATTTTTGGTGAACAACAATCAGGAGATGTTGGAAATGTTGGTGTTGATCTGTTTTTTGAGATGCTCTTCGAGAGCTTGTCCAAGGTTGAAGATCACTGTGTTGTTTCAGTTCCTTATCACTCGGTACAGGTTGACATCAACATAAATCCTCATCTCCCTTCTGACTACATTAATTATCTGGAGAACCCTATGAAAATAATAAGTGATGCTGAGAGAGTAGCCGAGAAAGACATCTGGAGTCTGATGCAATTTACAGAGAATTTGCGCCGTCAATATGGCAAAGAACCTCGCTCCATGGAGATTTTACTAAAGAAGCTTTACTTGAGGAGAATGGCGGCTGATTTAGGGATAACTAGAATTTACTCTTCAGGGAAGATGATCTTTATGAAAACAAACATGAGTAAAAAGGTATTCAAACTGATGATAGAGTCCATGGCATCAGATTTACATAGAAATTCATTGGTTCTTGAGGGGGACCAAATTAAGGCTGAACTTCTTTTAGAGCTACCAAAAGAGCAACTTCTTAATTGGATCTTTCAATGCTTGGCTGAACTTCATGCTTCACTACCCTCCTTCATAAAGTACTAG 2469 0.4309 MASSSSLLPRPHLPTPLISKLNSSPTTWSLFILTRPAHLRHGNKQKLPSFPINAVYTPHSPYTHSTPSKTEPRNDPISLLNERIRREYSKKEVFRTVMNSEEAGKYMRMVKEQQQKGLQKLKGDRESKNGVFSYRVDPYTLRSGDYVVHKKVGIGRFVGIRFDSAKNSSQATEYVFIEYADGMAKLPVNQASKMLYRYSLPNETKKPRTLSKLNDTGAWERRKVKGKVAIQKMVVDLMELYLHRLKQRRPTYLRTPALAEFEAQFPYEPTPDQKQAFIDVERDLTEQETPMDRLICGDVGFGKTEVAIRAIFCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDVKVGLLSRFQTKAEKEENLDMIKNGSLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSSYSEEKVISAIKYELDRGGQVFYVLPRIKGLDEVMAFLVESFPNVEIAIAHGKLFSKQLEDTMEKFALGEIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKGLLSDQALERLAAIEECRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGVDLFFEMLFESLSKVEDHCVVSVPYHSVQVDININPHLPSDYINYLENPMKIISDAERVAEKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYLRRMAADLGITRIYSSGKMIFMKTNMSKKVFKLMIESMASDLHRNSLVLEGDQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIKY* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00483 822 Gene3D - 141 655 IPR027417 -
Lapu1g00483 822 SMART ultradead3 265 457 IPR014001 -
Lapu1g00483 822 CDD DEXHc_TRCF 255 448 - -
Lapu1g00483 822 Gene3D - 668 815 IPR037235 -
Lapu1g00483 822 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 455 621 IPR001650 -
Lapu1g00483 822 SMART CarD_TRCF_2 140 242 IPR003711 -
Lapu1g00483 822 Pfam TRCF domain 674 761 IPR005118 GO:0006281
Lapu1g00483 822 SMART helicmild6 493 577 IPR001650 -
Lapu1g00483 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 590 IPR027417 -
Lapu1g00483 822 Pfam CarD-like/TRCF domain 141 241 IPR003711 -
Lapu1g00483 822 SUPERFAMILY CarD-like 135 203 IPR036101 -
Lapu1g00483 822 Pfam Helicase conserved C-terminal domain 470 576 IPR001650 -
Lapu1g00483 822 SMART TRCF_a_2_a 672 770 IPR005118 GO:0006281
Lapu1g00483 822 SUPERFAMILY TRCF domain-like 665 812 IPR037235 -
Lapu1g00483 822 Gene3D - 144 204 - -
Lapu1g00483 822 Gene3D - 205 448 IPR027417 -
Lapu1g00483 822 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 671 783 - -
Lapu1g00483 822 Pfam DEAD/DEAH box helicase 291 429 IPR011545 GO:0003676|GO:0005524
Lapu1g00483 822 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 446 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00483 Lapu-Chr1 15984854 16001671 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00483 - - gmx:100791900 1455.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00483 1 15984854 16001671 Lapu1g00483 1 15984854 16001671 ECH