Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00476 ATGGGTTCTTCTTTGTGGACCGTGTGTCTGATATTGGCATCACTGACCTCTGCAGCAGTCTGTGCCAACCCTCGGAGGCCAGTGGATGTACAATTTGGCCGAAACTACGTTCCCACATGGGCTTTTGATCACATCAAATACTTCAATGGTGGGTCTGAGATTCAGCTTCATCTTGACAAGTACACTGGTACTGGCTTTCAGTCCAAGGGGTCATATTTGTTTGGTCATTTCAGCATGTACATAAAGATGGTTCCTGGAGATTCGGCTGGCACAGTCACTGCTTTCTATTTATCTTCTCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACTGGACAACCTTACATTTTGCAAACCAATGTTTTCACTGGAGGCAAGGGTGACAGAGAGCAAAGAATCTATCTCTGGTTTGACCCCACCAAAGCATACCACAGATACTCTATTCTCTGGAACTTGTATCAGATTGTGTTCTTTGTGGACGATGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGAGTGAAGTTCCCATTCGACCAACCTATGAAGATATACAACAGTTTGTGGAATGCTGATGACTGGGCAACAAGGGGTGGTTTAGAGAAAACAGATTGGTCCAAAGCTCCCTTCATAGCAGCATACAAGGGGTTCCACATAGATGGGTGTGAGGCCTCTGTGAACGCCAAGTTCTGTGACACACAGGGAAAGAGATGGTGGGACCAACCAGAGTTCCGTGACCTTGATGCTGCCCAATGGCGAAGACTCAGATGGGTGCGTCAGAAATTCACCATCTACAACTACTGCACTGACAGAAAACGCTACCCTCAACTTCCCCCTGAATGCAGAAGAGACCGTGACATTTAA 882 0.4671 MGSSLWTVCLILASLTSAAVCANPRRPVDVQFGRNYVPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSILWNLYQIVFFVDDVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWRRLRWVRQKFTIYNYCTDRKRYPQLPPECRRDRDI* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00476 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 291 IPR013320 -
Lapu1g00476 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Lapu1g00476 293 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Lapu1g00476 293 FunFam Xyloglucan endotransglucosylase/hydrolase 19 289 - -
Lapu1g00476 293 Gene3D - 17 293 - -
Lapu1g00476 293 CDD GH16_XET 27 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lapu1g00476 293 PIRSF EndGlu_transf 2 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lapu1g00476 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 30 287 IPR044791 GO:0004553
Lapu1g00476 293 Pfam Glycosyl hydrolases family 16 33 213 IPR000757 GO:0004553|GO:0005975
Lapu1g00476 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 220 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00476 Lapu-Chr1 15821143 15823938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00476 1 293 Glycoside Hydrolase AT5G13870 79.181 0.0 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00476 K08235 - gmx:547775 605.52