Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00474 ATGGGCGCGAGCAGCGATCCGACCCAAGACGGGTCGGACGAGCAGCAGAAGCGGTCTGAGATCTACACGTACGAGGCGCCCTGGCACATCTACGCCATGAACTGGAGTGTCCGCCGCGACAAGAAGTACCGCCTGGCCATCGCCTCCCTACTGGAACAGTACCCCAACCGCGTCGAGATCGTCCAGCTCGATGACTCCAACGGCGAGATCCGCTCCGACCCCAACCTCTCCTTCGAGCACCCCTACCCTCCCACCAAGGCCATATTCATCCCCGACAAGGACTGCCACCGCCCCGACCTTCTCGCTACCTCCTCCGACTTCCTCCGCGTCTGGCGCATCGCCGACTCCGACGCCGAATCCTCCCCTCGTGCCGTCGAACTCAAGTCACTCCTCAACGGAAACAAAAACAGCGAGTACTGTGGGCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCACGCCGCATCGGCACCTCCAGCATCGACACCACCTGCACCATCTGGGACATCGAGAAGGAAACCGTCGACACGCAGTTAATCGCGCACGATAAAGAGGTTTACGACATCGCTTGGGGCGGCGTTGGCGTCTTCGCTTCCGTCTCAGCTGATGGCTCCGTTAGGGTTTTCGATCTCCGCGACAAGGAGCACTCCACGATAATCTACGAGAGTTCTGAACCGGACACTCCTCTGGTTCGGCTCGGGTGGAACAAGCAGGACCCGAGGTACATGGCCACGATTATCATGGACAGTGCCAAGGTGGTGGTGCTGGATATTCGCTTCCCCACGCTCCCTGTGGTGGAGCTGCAGCGGCACCAGGCCAGCGTTAACGCAATTGCGTGGGCCCCGCATAGCTCCTGCCATATATGCACCGCTGGGGACGACTCTCAGGCGCTGATTTGGGATTTGTCATCCATGGGTCAACCCGTGGAGGGTGGGCTTGACCCGATTCTTGCATACACTGCTGGCGCGGAGATTGAGCAGCTTCAGTGGTCGTCTTCGCAGCCTGATTGGGTCGCCATTGCGTTCTCCACTAAACTTCAGATTCTTAGGGTTTGA 1056 0.5975 MGASSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRSDPNLSFEHPYPPTKAIFIPDKDCHRPDLLATSSDFLRVWRIADSDAESSPRAVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00474 351 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Lapu1g00474 351 SMART WD40_4 124 169 IPR001680 GO:0005515
Lapu1g00474 351 SMART WD40_4 172 210 IPR001680 GO:0005515
Lapu1g00474 351 SMART WD40_4 261 301 IPR001680 GO:0005515
Lapu1g00474 351 SMART WD40_4 71 112 IPR001680 GO:0005515
Lapu1g00474 351 Gene3D - 13 350 IPR015943 GO:0005515
Lapu1g00474 351 SUPERFAMILY WD40 repeat-like 54 309 IPR036322 GO:0005515
Lapu1g00474 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 304 - -
Lapu1g00474 351 FunFam WD repeat-containing protein LWD1 17 350 - -
Lapu1g00474 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 304 IPR001680 GO:0005515
Lapu1g00474 351 Pfam WD domain, G-beta repeat 268 301 IPR001680 GO:0005515
Lapu1g00474 351 Pfam WD domain, G-beta repeat 179 210 IPR001680 GO:0005515
Lapu1g00474 351 PANTHER WD REPEAT CONTAINING PROTEIN 12 351 IPR045159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00474 Lapu-Chr1 15791080 15795630 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00474 K11805 - gmx:100818850 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00474 1 15791080 15795630 Lapu1g00474 1 15791080 15795630 ECH