Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00460 ATGAACATAATCAGATCTAAATTGTCTCTTCTCTCCGTTGTGCTATTACGCATCAACCATAACTGTCTTGTTGTTAATCGTTGTCACATGGTAGAACTGCCCCTTATGAGTGATACTTTCAATTTCTTTAACCCTTATAAGTATGAAACACTTTTAGCACCGGGGGGTTTGTCAGTCAGGCCCTTTTCTACTTCATCTTCAACCAGAAGCCTTGGGGAGTCAACTGATGCCCCTACACATGACGCCTTGAGTGATGACGATGATGGGGATGGTGATGATGATGATGATGAGAATGGTACCCATTGTAGTAAGTTACATTTAAGAGATGATGATCTTGCCCAAGATGTTAAAACCATTTTGGATATAATGCATGGGATGGGTTCTGGACCATCTGACATTAAGCGGAAGCTTGAACATTGCAGTGTGGTGCCGTCACAAGAGCTGGTTGTGGAGGTCCTTTCAAAAACTCGCAATGATTGGGAAGCGGCTTTCACATTTTTCTTGTGGGCTGGAAAGCAGCCCGGGTATGCTCATTCGGTTCGGGAGTACCATTCTATGATCTCCATTCTTGGGAAAATGAGGAAGTTTGATACTGCTTGGACCTTAATTGAGGAAATGAGAGGAGGTAGAACTGGTCCATCTCTTGTCACTCCACAGACACTGTTGATCATGATCAGGAGATACTGTGCTATACATGATGTTGCAAGGGCTATCAATACTTTCTATGCTTATAAACGGTTTAACTTTCCAATTGGGCTAGATGAATTTCAAAGCCTTCTTTCTGCCCTTTGCCGGTATAAGAATGTGCAAGATGCTGAGAACTTACTGTTCTGCAACAAAAATGTATTTCCATTTGACACCAAAAGCTTTAACATAATTCTGAATGGATGGTGTAATTTGATTGTTAGCACTAGTCAGGCAGAAAGAATATGGAAGGAGATGACCAAGAGAGGAATCAAACACGATGTTGTCTCTTATGGAAGTATCATATCTTGCTATTCAAAATCTTCTACACTTTATAAGGTGCTTAGGATGTTTGAGGAGATGAAGAAAAGGAAGATCACTCCAGATAGGAAGCTTTATAATGCCGTAATTCATGCTCTAGCAAAGGGTAGGCTTGTGAAAGAAGCTGCTAATCTCATTGGAAAAATGGAAGACAACAACATTATTCCGGATGTTGTTACTTACAACTCCTTGATCAAGCCTCTTTGCAAAGCCCGCAAAGTTGATGAAGCTAAACAACTTTTTGATGAGATGTTGAAGCGGCGCCTATACCCAACAATTCAAACTTTTCATGCTTTCTTCCGTATGTTAAGGACCAAGGAAGAAGTGTTTGAGCTCTTGGACAAAATGAGAGAGCTGAGATGCTACCCAACCAACGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGCTGGCGCCAGCTTGATGATGTATTTAAGATATGGGATGCGATGAGGGAAGATGGAATCAGCCATGATCGTAGTTCATATATAGTACTGATTCATGGACTGTTTCTAAATGGAAAGCTAGAAGAAGCATACAGATATTATGCAGAGATGCAAGAGAAAGGTTTCCTTCCTGAACCAAAGACAGAAGAAATACTTCAGGCATGGGTTTCTGGGAAACAGGCAATGGAGGACCAGAAGGGTAACAAGAGAACGAGGTTTTTCTTTATGGGATTAAGACGAGGTCCAAAGACACTTCACTACTTTATCTTCGATGAAGACACTTATTGGTCAGCATACCTCAAATTCAATTTTGTATACCCCATACAGGTGAATGGCATAAGGGTGTATAGCCGGACTTCAATTTCCTCATCATAA 1827 0.4083 MNIIRSKLSLLSVVLLRINHNCLVVNRCHMVELPLMSDTFNFFNPYKYETLLAPGGLSVRPFSTSSSTRSLGESTDAPTHDALSDDDDGDGDDDDDENGTHCSKLHLRDDDLAQDVKTILDIMHGMGSGPSDIKRKLEHCSVVPSQELVVEVLSKTRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWTLIEEMRGGRTGPSLVTPQTLLIMIRRYCAIHDVARAINTFYAYKRFNFPIGLDEFQSLLSALCRYKNVQDAENLLFCNKNVFPFDTKSFNIILNGWCNLIVSTSQAERIWKEMTKRGIKHDVVSYGSIISCYSKSSTLYKVLRMFEEMKKRKITPDRKLYNAVIHALAKGRLVKEAANLIGKMEDNNIIPDVVTYNSLIKPLCKARKVDEAKQLFDEMLKRRLYPTIQTFHAFFRMLRTKEEVFELLDKMRELRCYPTNETYIMLIRKFCRWRQLDDVFKIWDAMREDGISHDRSSYIVLIHGLFLNGKLEEAYRYYAEMQEKGFLPEPKTEEILQAWVSGKQAMEDQKGNKRTRFFFMGLRRGPKTLHYFIFDEDTYWSAYLKFNFVYPIQVNGIRVYSRTSISSS* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00460 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Lapu1g00460 608 Gene3D Tetratricopeptide repeat domain 405 560 IPR011990 GO:0005515
Lapu1g00460 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Lapu1g00460 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Lapu1g00460 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 321 IPR002885 -
Lapu1g00460 608 NCBIfam pentatricopeptide repeat 497 528 IPR002885 -
Lapu1g00460 608 NCBIfam pentatricopeptide repeat 324 357 IPR002885 -
Lapu1g00460 608 NCBIfam pentatricopeptide repeat 462 494 IPR002885 -
Lapu1g00460 608 NCBIfam pentatricopeptide repeat 394 427 IPR002885 -
Lapu1g00460 608 NCBIfam pentatricopeptide repeat 183 207 IPR002885 -
Lapu1g00460 608 NCBIfam pentatricopeptide repeat 360 393 IPR002885 -
Lapu1g00460 608 Pfam PPR repeat 183 207 IPR002885 -
Lapu1g00460 608 Pfam PPR repeat 497 526 IPR002885 -
Lapu1g00460 608 Pfam PPR repeat 462 491 IPR002885 -
Lapu1g00460 608 Pfam Pentatricopeptide repeat domain 309 368 IPR002885 -
Lapu1g00460 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Lapu1g00460 608 MobiDBLite consensus disorder prediction 63 77 - -
Lapu1g00460 608 Pfam PPR repeat family 391 438 IPR002885 -
Lapu1g00460 608 Gene3D Tetratricopeptide repeat domain 302 404 IPR011990 GO:0005515
Lapu1g00460 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Lapu1g00460 608 MobiDBLite consensus disorder prediction 63 103 - -
Lapu1g00460 608 Gene3D Tetratricopeptide repeat domain 135 300 IPR011990 GO:0005515
Lapu1g00460 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Lapu1g00460 608 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 109 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00460 Lapu-Chr1 15423112 15425175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00460 172 536 Glycosyltransferase AT1G05670 26.954 1.32e-32 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00460 - - gmx:100785546 892.493