LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu1g00447	ATGGGTGCGAGTCGAAAGCTCCAGGGAGAAATAGATCGTGTTCTGAAGAAGGTCCAGGAAGGTGTTGAAGTCTTCGATAGCATCTGGAACAAGGTTTACGACACGGACAATGCTAACCAGAAGGAGAAGTTTGAAGCAGACCTCAAGAAGGAGATTAAGAAGCTCCAGAGGTATAGAGACCAAATCAAGACGTGGATTCAGTCCAGTGAGATCAAGGACAAGAAGGTTAGTGCCTCATATGAGCAAGCTTTGGTGGATGCACGCAAGCTAATTGAACGAGAAATGGAAAGATTTAAGATATGTGAGAAGGAAACGAAGACCAAAGCATTTTCTAAAGAAGGTTTGGGTCAGCAGCCTAAGACTGATCCGAAAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTAAACAATGTGGTTGGAGAGTTAGAATCACAGATTGATAACTTTGAAGCAGAGCTTGAAGGGCTTTCTGTTAAGAAAGGAAAGAGCAGGCCACCCAGATTGACACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAAAAATGTGAATTCATTTTGAGGCTACTAGATAATGATGAATTAAGTCCTGAGCAGGTTAATGATGTCAAAGATTTCTTGGATGACTATGTTGAGCGTAATCAGGAGGATTTTGACGATTTTAATGATGTTGATGAACTATACAGTTCATTACCTTTAGACAAGGTGGAGACATTAGAAGATCTTGTTACAATTCCCACTGGTCTTTCTAAGGTAAAGGTGGCACCTAGTCTTGGTGTGAAGAATTCTTCGGCAGTATCAACTTCACAATCAGCGTCAGCATCTGCATCACAAACATCTGAAACTATTATTTCTAATCATCAGGATACTTCCATCCAGGAGCAAGCTGATGACACAGCATCCCAGGATAGCAATTCTGACAATGTTGCCAAAACTCCACCTCCTAAAAGTGTTGGAATTAGTTCTGCTGCTTCAACTCCTACTGGCAATCACACTTCTCCGATTTCTGTGAATGTTTCTAGTCATACCCTGTCTAGTCCACCTGCTGTTGCAGCCATACCTGGTTCAAATTCTGTGCGGAATGTATTGGAGAGTAGTAATGTTACCAATTCATCTTCTGTAAATCAGTCTACCACTACAAAGGAAGAAGACATTAATAGCTTCCCTAGCCGGAGACTGTCTCCATCACTTTCTGATGCAACACTTTTGAGGGGAAGAAATTCCCTATCAAATCAAGCAACAGCCAGCATCCCTCTTGGTTCTGCAAACATGGTCCCTAGCAATGGGGCCCTTGGATCAGTCCCTTCAGCCTCTGAAATAGCTAAAAGAAACATGTTGGCAGCTGATGATAGACTTGGAAGTAGTGCGATGGTGCAGCCTCTTGTATCCCCTTTAAGTAATAGATTGATCTTGCCTCAGGCTGCAAAGGCTAATGATGGAACTGTTTCAGTTGACTCTAGTACTGTTAATGACGCTGCAGCGGTATCTGGGAGAGTTTTCTCCCCTTCTGTGGTTCCTGGCATGCAATGGAGACCAGGAAGTCCCTTTCAGAATCAGAATGATGCTGGCCAGCTTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGGGAAAAGTTTTTGCAGAAGTATCAGCAAGTGCAACAAGGGCACAGTACCCTTCTTAATATGCCTTCTCTTGTTGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAACCCCCTTTTGCAACAGTTTAACTCTCATGGCTCATCTGTTTCTTCTCAATCTGGTATTGGACTTGGGGTCCAGTCCACAAGTCTCAGTGGTATTTCTTCTGCATCACTACAGCAGCCACCCAATTCTGTCCATTCCCCCTCTAGTCAACAGTCACTGATGCCAGGTGTTTCTAAAGATTCAGATGTTGGCAATTCTAAGATAGAAGAACAGCAGCATCAGAATTTTCCTGATGAGCCAACAACAGAATCTACTGCTAGCACTGGGGTTGGCAAGAATCTCGTAAATGAAGATGATTCAAAATCAGCATATGCTGTAGATTCTCCTGTAGGAGTGTCTGCCTCTCTTCCAGAATCTGTTCAAACTTCCAGAGATATTGATTTGTCTCCTGGCCAACCATTACAATCCAATCAACCTACTGGCAACCTTGGTGTCATTGGAAGAAGAAATGGTGCTGAACATGGAGCAATTGGTGATAGTTTTAGTGGATCAAGTGTTAGTTCTGGTGGAGTCCGTGATCAATTATATAATTTGCAAATGCTTGAGGCAGCCCACTTCAAAATTCCCCTACCCAAAGACTCAGAACGTCCAAGGACTTATACTCCTAAGCATCCAACAATTACACCTCCTAGTTATCCTCAAGTACAGTCTCCTATTGTTAATAATCCTGCCTTTTGGGAGAGAGTGGGTCTGGAACCTTTTGGAACTGATACTCTTTTCTTTGCATTTTATTATCAACAGAATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAACACTTGGTTTCAGCGGCATGAAGAGCCCAAAGTTGCTACTGATGAATATGAGCAGGGAACTTATGTGTACTTTGATTTCCATATTGCAAATGATGACATGCAACATGGATGGTGTCAAAGAATCAAGACGGAATTCACTTTTGAGTACAATTATCTTGAAGATGATCTCCTTGTATAG	2709	0.4241	MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKSRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFNDVDELYSSLPLDKVETLEDLVTIPTGLSKVKVAPSLGVKNSSAVSTSQSASASASQTSETIISNHQDTSIQEQADDTASQDSNSDNVAKTPPPKSVGISSAASTPTGNHTSPISVNVSSHTLSSPPAVAAIPGSNSVRNVLESSNVTNSSSVNQSTTTKEEDINSFPSRRLSPSLSDATLLRGRNSLSNQATASIPLGSANMVPSNGALGSVPSASEIAKRNMLAADDRLGSSAMVQPLVSPLSNRLILPQAAKANDGTVSVDSSTVNDAAAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRGRTEIAPDQREKFLQKYQQVQQGHSTLLNMPSLVGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLSGISSASLQQPPNSVHSPSSQQSLMPGVSKDSDVGNSKIEEQQHQNFPDEPTTESTASTGVGKNLVNEDDSKSAYAVDSPVGVSASLPESVQTSRDIDLSPGQPLQSNQPTGNLGVIGRRNGAEHGAIGDSFSGSSVSSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPTITPPSYPQVQSPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV*	903

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu1g00447	902	MobiDBLite	consensus disorder prediction	764	787	-	-
	Lapu1g00447	902	MobiDBLite	consensus disorder prediction	604	714	-	-
	Lapu1g00447	902	Coils	Coil	41	61	-	-
	Lapu1g00447	902	Coils	Coil	132	159	-	-
	Lapu1g00447	902	PANTHER	CCR4 NOT-RELATED	24	898	IPR040168	GO:0030015
	Lapu1g00447	902	MobiDBLite	consensus disorder prediction	687	714	-	-
	Lapu1g00447	902	MobiDBLite	consensus disorder prediction	110	131	-	-
	Lapu1g00447	902	MobiDBLite	consensus disorder prediction	650	668	-	-
	Lapu1g00447	902	MobiDBLite	consensus disorder prediction	320	400	-	-
	Lapu1g00447	902	MobiDBLite	consensus disorder prediction	291	400	-	-
	Lapu1g00447	902	FunFam	CCR4-NOT transcription complex subunit 3 isoform X1	742	897	-	-
	Lapu1g00447	902	MobiDBLite	consensus disorder prediction	291	314	-	-
	Lapu1g00447	902	Gene3D	-	742	897	IPR038635	-
	Lapu1g00447	902	PIRSF	NOT_su_3_5	1	902	IPR012270	GO:0006355\|GO:0030015
	Lapu1g00447	902	Pfam	Not1 N-terminal domain, CCR4-Not complex component	4	236	IPR007207	GO:0005634\|GO:0006355
	Lapu1g00447	902	MobiDBLite	consensus disorder prediction	604	632	-	-
	Lapu1g00447	902	Pfam	NOT2 / NOT3 / NOT5 family	758	896	IPR007282	GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu1g00447	Lapu-Chr1	15169229	15182060	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu1g00447	K12580		-	gmx:100785965	1525.38

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu1g00447	1	15169229	15182060	Lapu1g00447	1	15169229	15182060	ECH