Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00443 ATGGCCGCTGTTTCCCAATCTCAATCGCAACCACTTCCGCTCCAAGACCGAGTCGCAATCGTTACCGGCTCCTCCCGCGGAATCGGCCGCGAAATCGCGATTCACCTCGCTTCACTCGGTGCGCGAATCGTCGTCAATTACACCTCCAACTCGTCCCAAGCCGACTCAGTAGCCGCCCAAATCAATGCAAACTCCGCCACGCCACGCGCTGTCGTGGTTCAGGCCGACGTGTCCGAACCGAGCCAAGTCAAGTCCCTCTTCGACTCGGCCGAGCGCGCCTTCGACTCGCCGATCCACATCCTGGTCAACTCGGCGGGCGTCCTCGACGGCACGTACCCGTCCATCGGGAACACCTCCATGGAGTCCTTCGACCGCACCTTCGCGGTGAACATGCGTGGCGCGTTTGCGTGCGCTAGGGAGGCAGCGAACCGGTTGAAGCGCGGCGGCGGGGGGCGGATCATCCTGTTGACGTCGTCGCAGGTGGTGGCGCTGCGGCCGGGGTTCGGCGTGTACGCTGCGTCGAAGGCAGCGGTGGAGGCGATGGTGAAGGTGCTGGCAAAGGAGTTGAAGGGAACGCAGATCACGGCGAACTGCGTGGCGCCGGGACCCATCGCGACGGAGATGTTCTTCGAGGGGAAGTCGGAGGAGACTGTGAATAGGATCGTGCAAGAGAGTCCTTTGGGGAGGCTGGGTGAGACCAAAGACGTGGCTCCTGTTGTGGGGTTCTTGGTCACTGATGCTGCTGAATGGGTCAATGGTCAAATTGTTCGTGTTAATGGTGGTTATGTTTAG 792 0.6111 MAAVSQSQSQPLPLQDRVAIVTGSSRGIGREIAIHLASLGARIVVNYTSNSSQADSVAAQINANSATPRAVVVQADVSEPSQVKSLFDSAERAFDSPIHILVNSAGVLDGTYPSIGNTSMESFDRTFAVNMRGAFACAREAANRLKRGGGGRIILLTSSQVVALRPGFGVYAASKAAVEAMVKVLAKELKGTQITANCVAPGPIATEMFFEGKSEETVNRIVQESPLGRLGETKDVAPVVGFLVTDAAEWVNGQIVRVNGGYV* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00443 263 FunFam Short-chain dehydrogenase reductase 5 263 - -
Lapu1g00443 263 CDD THN_reductase-like_SDR_c 14 263 - -
Lapu1g00443 263 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 6 261 - -
Lapu1g00443 263 Pfam Enoyl-(Acyl carrier protein) reductase 23 262 - -
Lapu1g00443 263 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 158 186 IPR020904 GO:0016491
Lapu1g00443 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Lapu1g00443 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 IPR002347 -
Lapu1g00443 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 IPR002347 -
Lapu1g00443 263 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Lapu1g00443 263 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Lapu1g00443 263 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
Lapu1g00443 263 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Lapu1g00443 263 PRINTS Glucose/ribitol dehydrogenase family signature 171 190 IPR002347 -
Lapu1g00443 263 PRINTS Glucose/ribitol dehydrogenase family signature 192 209 IPR002347 -
Lapu1g00443 263 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 262 IPR036291 -
Lapu1g00443 263 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 17 207 - -
Lapu1g00443 263 Gene3D - 2 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00443 Lapu-Chr1 15097208 15098258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00443 18 261 Acyl Lipid Metabolism Gene Families AT1G24360 33.603 2.12e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00443 K00059 - gmx:100809416 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00443 1 15097208 15098258 Lapu1g00443 1 15097208 15098258 ECH