Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00442 ATGGCAATTGCACGCACCGGAGTCTATGTAGATGACTATTTGGAGTATGCCAGCACATTACCCGCTGAACTTCAGAGGCTGCTCAACACTGTCCGCGAACTCGATGAACGATCCCAATCTATGATAAACCAAACCAGGCAGCAGACAAAGTATTGTATGGGGTTCCCATCACATGGCTCTAAGAAGGGTAATCATAGTTATAATAACAATTATGGGAATGAGGACGAAGATGTCGCTTTTGAAAAAATGCGAAAAGAAATTGAGGGAAATCAGGATAGTGCGTTGAGTCTATGTACTGAGAAGGTTTTGTTGGCGCGACAAGCATATGACCTGATAGATAGCCATGTTAAACGACTTGATGAAGATTTAAACAACTTTGCTGAAGATTTAAAGCAAGAGGGTAAAATACCTCCAGATGAACCAGCAATTCTGCCCCCATTGCCTATAGTTCCTAAAGCTGAAAAGCGCAAGCCCATATACATAACTCCTCAACCAAAGAGAATTGATTACAGGGATAGAGATTGGGATAGGGAGCGCGATAGGGACTTCGAGTTAATGCCTCCACCAGGAAGTCATAAGAAAGAGTATGCTACCCCAATGGATGTTGATCAACCTATTGATCCAAATGAACCTACATACTGTGTTTGTCATCAGGTATCTTTCGGGGATATGATTGCCTGTGACAACGAAAATTGCCAAGGAGGTGAATGGTTCCACTATTCGTGTGTTGGGCTAACGCAGGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCGACTTGCCTATTACTCCCACAATGTCAACGATGA 807 0.4325 MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFPSHGSKKGNHSYNNNYGNEDEDVAFEKMRKEIEGNQDSALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVPKAEKRKPIYITPQPKRIDYRDRDWDRERDRDFELMPPPGSHKKEYATPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTQETRFKGKWYCPTCLLLPQCQR* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00442 268 SMART ING_2 9 126 IPR024610 -
Lapu1g00442 268 ProSiteProfiles Zinc finger PHD-type profile. 211 263 IPR019787 -
Lapu1g00442 268 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 126 IPR024610 -
Lapu1g00442 268 Coils Coil 24 44 - -
Lapu1g00442 268 PANTHER INHIBITOR OF GROWTH PROTEIN 2 261 IPR028651 -
Lapu1g00442 268 FunFam PHD finger protein ING 205 263 - -
Lapu1g00442 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 262 IPR013083 -
Lapu1g00442 268 SUPERFAMILY FYVE/PHD zinc finger 188 261 IPR011011 -
Lapu1g00442 268 SMART PHD_3 213 261 IPR001965 -
Lapu1g00442 268 CDD ING_plant 17 123 - -
Lapu1g00442 268 Gene3D - 5 124 - -
Lapu1g00442 268 CDD PHD_ING 213 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00442 Lapu-Chr1 15081528 15088938 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00442 - - gmx:100787916 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00442 1 15081528 15088938 Lapu1g00442 1 15081528 15088938 ECH