Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00420 ATGCAGTTGTTGCTGCATGGCTTCCAGGTAGCGAAGAAATCATCTAATGAAGTATACCCCCACACATATTCAAGAAATTATTCCCAAAACAATTCCACAACTCCAAAACTCCCTAAGGTATCTGGTGTGGTGATTCACGTTATCCCAGTCTCATCTAAAAAGGATAAAAATCATCTGTCTCTCATCTCTGTCTCTCTTTCACTTACTATGGATCTGGAGCAAATGGCTAAAATCTCTATGTTGTTGGTGGGGCTTTGGCTCCTAGTTAACTGGGCAGGTATGTTGAGTGTAGATCAAATGAAGTACAAGGACCCTGAACAGTCAGTGGATACTCGTGTTGAGGATCTTCTTAGCAGGATGACTCTTGAGGAAAAAATTGGTCAAATGTTGCAGGTTGAGCGTAAGCATGCATCTGCTGATTTGGTTAAGAAGTATTTTATTGGGAGTGTAATGAGTGAGGGAGGGAGTCTTCCGGCTCCACAGGCATCTGCTGAAACCTGGGTTGACATGGTGAATGAATTTCAGAAGGGTGCTTTGTCAACCCGGCTTGGAATTCCAGTGTTTTATGGTGTTGATGCTGTTCATGGCCACAACACTGTTCACAATGCAACTATTTTTCCTCACAATATTGGTCTTGGAGCTACCAGGGACCCTGAACTAGTTAAGAGAATTGGAGCTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATGCTTATGCACCTTGTATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTACAGTGAAGATACTGAACTAGTTCAAGCTATGACCGAAATCATACCAGGATTGCAAGGGGACATCCCTGATAATTTACCAAAGGGTGTCCCTTATATCGCTGGAAAAGAAAATGTTCTAGGTTCTGCTAAGCACTATGTGGGTGACGGTGGAACAATCAATGGGATTAATGAGCACAACACTGTTATAGATAGAGATGAATTGATGAAAATTCACATGCCACCCTACTTGAGTTCAATCAATAAAGGTGTGGCAACCATTATGGTCTCTTACTCCAGTTGGAATGGTGTAAAAATGCATGCTCACCATGATCTTATTACTGGCTTCCTCAAGGATACTGCCCATTTCAAGGGCATTGTCATTTCGGATTTTGAGGGTATTGATAGGATCACGACTCCACATCGTGCAAACATCAATTATTCAATCGAAGCAGGAGTTTCTGCTGGCATTGACATGCAGTTCATGTTTCCAAAGCTTTACACAGAATTCATAGATGGTCTATCCATGTTGGTGAAAAATAAGAACATTCCCATGAGTCGAATTGATGATGCGGTGAGAAGAATTTTGAGGGTTAAGTTCATTATGGGTATTTTTGAGAACCCTTTTGCTGACTACAGTTTGGCCAAATATTTGGGAATCCAGGAGCACAGAAATTTGGCTAGAGAAGCGGTAAGGAAATCAATGGTCCTTCTAAAAAATGGTCAATCTGCTGTCAACCCTTTATTGCCTCTTCCTAAAAAGGCACCAAAAATACTTGTGGCTGGAAGCCATGCAGATAATCTAGGATATCAGTGTGGTGGCTGGACCATAGAATGGCAAGGGGTCAGTGGGAACAATCTTCTCAAAGGGACTACAATTCTCTCTGCTGTGAAAAACACTGTTGACCCTGAAACCACGGTTATCTACAAGGAGAACCCTGATGCAGAATTTGTTAAATCCAATGGATTTTCCTATGCCATAGTTGTAGTAGGAGAGCGTCCTTATGCTGAAACGCATGGTGACGACATGAACTTGACAATCCCAAAAGATGGTCTTGAGACCATAAGAAACATCTGTGGAGTAACAAAATGTGTGGTTATCATAATTTCTGGTCGTCCTTTAGTGATTGAACCATATGTTGGTAAAATAGATGCACTTGTGGCTGCATGGCTTCCAGGAAGCGAAGGTGAAGGTGTGGCTGATGTTTTATATGGTGACCATGGTTTCACCGGAAAGCTTCCAAGAACATGGTTCAAATCTGTTGATCAGCTGCCAATGAATGTTGGAGATCCTCACTACGATCCCCTCTTCCCATTTGGGTTTGGCCTTTCTACCGAACCTACTAAGGCCTTGCTCTCTGTGTAG 2121 0.4248 MQLLLHGFQVAKKSSNEVYPHTYSRNYSQNNSTTPKLPKVSGVVIHVIPVSSKKDKNHLSLISVSLSLTMDLEQMAKISMLLVGLWLLVNWAGMLSVDQMKYKDPEQSVDTRVEDLLSRMTLEEKIGQMLQVERKHASADLVKKYFIGSVMSEGGSLPAPQASAETWVDMVNEFQKGALSTRLGIPVFYGVDAVHGHNTVHNATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYAYAPCIAVCRDPRWGRCYESYSEDTELVQAMTEIIPGLQGDIPDNLPKGVPYIAGKENVLGSAKHYVGDGGTINGINEHNTVIDRDELMKIHMPPYLSSINKGVATIMVSYSSWNGVKMHAHHDLITGFLKDTAHFKGIVISDFEGIDRITTPHRANINYSIEAGVSAGIDMQFMFPKLYTEFIDGLSMLVKNKNIPMSRIDDAVRRILRVKFIMGIFENPFADYSLAKYLGIQEHRNLAREAVRKSMVLLKNGQSAVNPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGVSGNNLLKGTTILSAVKNTVDPETTVIYKENPDAEFVKSNGFSYAIVVVGERPYAETHGDDMNLTIPKDGLETIRNICGVTKCVVIIISGRPLVIEPYVGKIDALVAAWLPGSEGEGVADVLYGDHGFTGKLPRTWFKSVDQLPMNVGDPHYDPLFPFGFGLSTEPTKALLSV* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00420 706 FunFam Beta-D-glucan exohydrolase isoenzyme ExoI 95 471 - -
Lapu1g00420 706 Pfam Glycosyl hydrolase family 3 N terminal domain 121 450 IPR001764 GO:0004553|GO:0005975
Lapu1g00420 706 SUPERFAMILY (Trans)glycosidases 100 486 IPR017853 -
Lapu1g00420 706 Pfam Glycosyl hydrolase family 3 C-terminal domain 487 696 IPR002772 GO:0004553|GO:0005975
Lapu1g00420 706 FunFam Glycosyl hydrolase family protein 472 698 - -
Lapu1g00420 706 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 487 696 IPR036881 GO:0004553|GO:0005975
Lapu1g00420 706 Gene3D - 472 698 IPR036881 GO:0004553|GO:0005975
Lapu1g00420 706 PRINTS Glycosyl hydrolase family 3 signature 368 386 IPR001764 GO:0004553|GO:0005975
Lapu1g00420 706 PRINTS Glycosyl hydrolase family 3 signature 252 268 IPR001764 GO:0004553|GO:0005975
Lapu1g00420 706 PRINTS Glycosyl hydrolase family 3 signature 298 314 IPR001764 GO:0004553|GO:0005975
Lapu1g00420 706 PRINTS Glycosyl hydrolase family 3 signature 206 225 IPR001764 GO:0004553|GO:0005975
Lapu1g00420 706 PRINTS Glycosyl hydrolase family 3 signature 182 198 IPR001764 GO:0004553|GO:0005975
Lapu1g00420 706 Gene3D - 95 471 IPR036962 GO:0004553|GO:0005975
Lapu1g00420 706 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 99 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00420 Lapu-Chr1 14653868 14673429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00420 61 701 Glycoside Hydrolase AT5G20950 66.303 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00420 K05349 - gmx:100816705 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00420 1 14653868 14673429 Lapu1g00420 1 14653868 14673429 ECH