Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00419 ATGGAAGTAGCTCTTTCCCCTCAAGTACCAAAGCAGAATTTTCAGATAACAGGTCGCAAAATTTTATGTGTTGGATCCCAGAAGGATCTGTGGCTTGTTGTGCGAGAAGGATCTCTAAATGATGTAGAGTTGGCCTTGGCATCATTGAAGAAGAGTGGGGGCAATATAAATTTGAGGAACACCTTTGGGTTGACTCCTCTTCATATTGCAAGTTGGAGAAACCATATTCCCATTGTAAGGAGGCTTCTTGCAGCTGGTGCAGATCCTGATGCCCGAGATGGAGAATCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCTGCGGCAAGCGTCCTTCTTCAACATGGTGCCTCTATTACATTGGAGGACTCTAAATCTCGAATACCTGTAGATCTCTTATCTGGCTCTGTATTTCAGGCTCTTGGAAATGAAAACAGTTCAGTGGCTACTGAGGTCTTTAGTTGGGGCAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGTTACCATGCAAAGTTGATTCACTCGGGGGTTCATTCATAAAGCTCATTTCTGCAGGGAAGTTCCATAGCGTGGCGCTCACTGCTCGTGGAGAAGTGTATACTTGGGGATTTGGAAGAGGTGGACGTCTAGGGCATCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATTACTCCCCGCCAGGTGACTTCTGGTCTGGGTTCCCGCAGAGTGATGACAATTGCTGCAGCTAAGCATCATACTGTCATTGCTACTCAGGGTGGTGAAGTATTCACTTGGGGGTCCAATAGAGAGGGACAGCTCGGGTACCCTTCTGTTGATACACAACCCACACCTCGTAGAGTATCTTCTTTGAGGTCAAAAATTGTTGCTGTTGCTGCAGCAAATAAACACACGGCTGTAGTGTCTGATTTAGGTGAAGTCTTTACTTGGGGTTGTAACAGGGAGGGTCAGCTTGGTTATGGCACCTCAAACTCAGCATCTAATTACACCCCGCATGTGGTTGAATCATTGAAGGGAAAGACTTTGACCAGGGTTTCTGCTGCAAAATATCACACAATTGTATTAGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTCGTTACTCCAAAACGTGTAGTAGTTAGTAGGAACTTGAAGAAAAGTGGAAGCACTCCTTTAAAATTTCACCGAAAGGAACGGCTTAACGTGGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCCCTTACAGATGATGGTGCATTATTTTATTGGGTCTCCTCGGATCCTGATCTTAGATGCCAACAGTTATATGCTATGTGTGGAAGAAATATGGTGAACATATCAGCTGGGAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGATAAGCCCCTTGTTGCAACTCGGTTGCATGGTGTAAAGAAGGCTACATCAGTTTCAGTTGGTGAAACACATTTACTGATTGTGGCTTCACTCTATCATCCTGTCTACCCTCCCAACATGATTGAGAATTCTCAGAATCTCAAGTTGAATAACAGGGATGATATGGATGAGTTAAATGAAGACATTCTATTTGACGATATAGATTCCAGTAAGATGATATCTAATGTACAAAATGACACTAGCAGGCAGAGATCTATACCCAGCTTAAAAAGCCTTTGTGAAAAAGTAGCTGCAGAGTGTTTAGTGGAGCCACGGAATGCAGTACAACTGCTTGAGATTGCTGATTCTCTTGGAGCTGATGATTTGAAGAAATATTGTGAGGAGATTGTCATGCGCAACCTTGATTACATATTTACAGTTTCATCGCATACCATAGCAAGTGCATCACCAGATGTTCTGGCTAACCTTGAGAAGTTGCTAGACCAGAGGTCATCTGAGCCATGGAGTCACTGGCGACTTCCTACCCCAACTGCTACTTTCCCTGCCATCATTAACAGTGAAGAGGATGATAGTGAGATAGAGTTTCAAAGGACTCGTGACAAACCCTTGAAAATGGAAAAAGTCCAAAGAGTAGATTCCTTTCTACAGCCCAAGGATGATCCTGATAAAGAAGTCTCCAAAGTAGTTCGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAGGTAAGCAGTCTAATGGACATCTTCTTGATGACCAGCAGATTGCAAAGCTTCAATCCAAGTCAGCACTTGAGAGCTCACTTGCAGAGCTAGGTGTTCCTGTTGAGACATCACAAAATAAAGAATCATCTTCAATGTTACCGGAAGGTAAAGGCAGTAAGAAGGGTAAACTGTCAAAGAAACAAAGGAGAAAGAGTGGCAAATCAAACAATGGACAGACAGAAATAGAATCTGTTTACTCTAAAAGTGAAGCCATTCCCAAATCGGAGGACATGTTGGACATTGAGATCTTGGAGGTTTCTGATTCAAAGGTGGAAGAGGATGCTGTATGTGAACAAATCACAGCAGACCAGGCTGAAAAAGATTTAAAGTTTGTAGTGCAGAAGAATGATGGTTTAGAGATGCTTAATGCAAAGGGTCCGTCACCAAAAGCTTCAAAGAAGAAGAGCAAGAAGGGTGGGCTTTCTATGTTTCTGAGTGGTGCTCTTGATGAAGCCCCGAAGGAGGTGGCTCCACCTCCACCACCAACACCAAAAATTGATGGTCCTGCATGGGGCGGGGCCAAGTTCATGAAGGGTTCTGCTTCTCTTCGCGAAATTCAGGATGAACAAGGAAAAATAAAGATAAACAAGCCAGCCGGGATCAAAGATAAGGTGGAAGATCTTTCTGATTTTGGCGGTGGGGTTAAAATAACGTTGAGTTCATTTCTTGTTTCCAGCCCAATACCTGTTACCTCAACTCGTAGTTCCCAGGTATCTGATGTAGAAGTAAGTACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCCCATCCTTCTCGGCCATCCTTAAGGGACATCCAAATGCAACAGGGAAAGAAACTACAAAGTCTTTCACACAGTCCAAAGACTAGAACAGCTGGATTTTCCATTGCTACCGGTCAGGGCGGCTCGCCCTCGGAAACAACTGGAGTGAGTCGGTGGTTCAAGCCTGAGGTGGAAACACCATCCTCAATTCGTTCTATTCAAATTGAGGAAAAGGCTATGAAAGATCTCAAGCGCTTCTATAGCAGTGTCAAGATTGTCAGGAAGCAATCTTGA 3240 0.4429 MEVALSPQVPKQNFQITGRKILCVGSQKDLWLVVREGSLNDVELALASLKKSGGNINLRNTFGLTPLHIASWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAAASVLLQHGASITLEDSKSRIPVDLLSGSVFQALGNENSSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLGGSFIKLISAGKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMTIAAAKHHTVIATQGGEVFTWGSNREGQLGYPSVDTQPTPRRVSSLRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKKSGSTPLKFHRKERLNVVSIAAGMVHSMALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVNISAGKYWTAAVTATGDVYMWDGKKGKDKPLVATRLHGVKKATSVSVGETHLLIVASLYHPVYPPNMIENSQNLKLNNRDDMDELNEDILFDDIDSSKMISNVQNDTSRQRSIPSLKSLCEKVAAECLVEPRNAVQLLEIADSLGADDLKKYCEEIVMRNLDYIFTVSSHTIASASPDVLANLEKLLDQRSSEPWSHWRLPTPTATFPAIINSEEDDSEIEFQRTRDKPLKMEKVQRVDSFLQPKDDPDKEVSKVVRAIRKKLQQIEMLEGKQSNGHLLDDQQIAKLQSKSALESSLAELGVPVETSQNKESSSMLPEGKGSKKGKLSKKQRRKSGKSNNGQTEIESVYSKSEAIPKSEDMLDIEILEVSDSKVEEDAVCEQITADQAEKDLKFVVQKNDGLEMLNAKGPSPKASKKKSKKGGLSMFLSGALDEAPKEVAPPPPPTPKIDGPAWGGAKFMKGSASLREIQDEQGKIKINKPAGIKDKVEDLSDFGGGVKITLSSFLVSSPIPVTSTRSSQVSDVEVSTPPWAASGTPPHPSRPSLRDIQMQQGKKLQSLSHSPKTRTAGFSIATGQGGSPSETTGVSRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQS* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00419 1079 Gene3D - 389 510 IPR009091 -
Lapu1g00419 1079 Gene3D - 142 388 IPR009091 -
Lapu1g00419 1079 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Lapu1g00419 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Lapu1g00419 1079 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Lapu1g00419 1079 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Lapu1g00419 1079 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Lapu1g00419 1079 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Lapu1g00419 1079 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Lapu1g00419 1079 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Lapu1g00419 1079 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Lapu1g00419 1079 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Lapu1g00419 1079 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Lapu1g00419 1079 Pfam Ankyrin repeats (3 copies) 37 127 IPR002110 GO:0005515
Lapu1g00419 1079 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Lapu1g00419 1079 MobiDBLite consensus disorder prediction 753 768 - -
Lapu1g00419 1079 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Lapu1g00419 1079 Coils Coil 520 540 - -
Lapu1g00419 1079 SUPERFAMILY RCC1/BLIP-II 119 431 IPR009091 -
Lapu1g00419 1079 SUPERFAMILY Ankyrin repeat 36 136 IPR036770 -
Lapu1g00419 1079 SUPERFAMILY RCC1/BLIP-II 407 507 IPR009091 -
Lapu1g00419 1079 MobiDBLite consensus disorder prediction 753 806 - -
Lapu1g00419 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Lapu1g00419 1079 MobiDBLite consensus disorder prediction 965 981 - -
Lapu1g00419 1079 MobiDBLite consensus disorder prediction 997 1038 - -
Lapu1g00419 1079 PANTHER BTK-BINDING PROTEIN-RELATED 26 1070 - -
Lapu1g00419 1079 Gene3D - 17 141 IPR036770 -
Lapu1g00419 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Lapu1g00419 1079 MobiDBLite consensus disorder prediction 856 909 - -
Lapu1g00419 1079 MobiDBLite consensus disorder prediction 965 1044 - -
Lapu1g00419 1079 SMART ANK_2a 62 91 IPR002110 GO:0005515
Lapu1g00419 1079 SMART ANK_2a 96 125 IPR002110 GO:0005515
Lapu1g00419 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Lapu1g00419 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Lapu1g00419 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Lapu1g00419 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Lapu1g00419 1079 Gene3D Potassium Channel Kv1.1; Chain A 520 619 IPR011333 -
Lapu1g00419 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Lapu1g00419 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00419 Lapu-Chr1 14588516 14598908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00419 33 136 Acyl Lipid Metabolism Gene Families AT5G53470 33.654 1.32e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00419 K24810 - gmx:100800604 1872.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00419 1 14588516 14598908 Lapu1g00419 1 14588516 14598908 ECH