Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00407 ATGGACTTCGATCACCACCTAACAGAGCTTTCCACTTCTTCACCATGCATTCCCTCCGGCGAGGACTTCCATTTCTACTACAAATTCACGGAGTTCCGACGTCCGATAGAAGAAATCGCGCGGAGGACGCAGTCGATGCTCAACAGAATCGGTTCCGCTGAGAATATTTGGGGCAGAGGCTCGACATTTCCTGCTGACGTCGACGACGCGTACGAGTGGCTTGTGAACGCGAACGACGACGTTTTTGAGCTGGTTGAGGAGTTGGTCGATGAGTTGCGGAGGATTAAGAAGGAGGAGGGAGAGGAATTTGAAAACGATTTGGAGGCGAAGACGAAAGTGCCGTTTCATATACCGACGATCAAGAAGCCTCAGTATGCCTACAATATTGTTGTTGATAATGCAAACCAGCCCTTTGAGCATGTTTTGTTGGAGAAGAGTGAAGATGGTCAGCGGTTTATTCATCCACTGGAGAAACTCTCTGTTTTAGATTTTGTTGATAAAGAAAATATCGAGAATCTTGTGCCAATAAAGCCTCCATCAATAGAATGCACCCCTTTCAAGCTTGTGGAGGAAGTCAAGGGATTGAAGGAGTTGGCTGCTAAGCTGTCTACAGTTAATGAATTTGCGGTGGATTTGGAACATAATCATTATCGGTCTTTCCAAGGTTTGACTTGCTTAATGCAAATCTCAACCAGGACTGAAGATTTTGTTATAGACACTCTGAAGGTTCGTAATCATGTTGGGCCATATCTGAGGGAAGTCTTCAAGGACCCTACCAAGAAGAAGGTCATGCATGGAGCGGATCGAGATATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTTTGTAATATGTTTGATACTGGCCAGGCTTCTAGAGTTTTAAAGTTGGAGAGATACAGTCTGCAATATCTTTTGCAACACTTCTGTGGGATTACTGCAAACAAGGAATACCAGAATGCAGATTGGAGATTACGCCCTCTTCCTGATGTGATGCTGAGATATGGCAGAGAGGATACACACTATCTGCTTTATATATATGATTCAATGCGGATCAAATTGTTTACATTGTCTAAGGAGTCTGAAGGCTGTGATAATCCTCTAATGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGCAATTATATGAGAAGGACCTGCTGACAGAAAACTCGTACCTTCGTATATATGGGTTGCGAGGGGCTGGTTTTAATGCTCAACAGCTTGCCGTTGTTTCAGGGCTTTGGGAATGGCGTGATGGTCATGCTCGTGCAGATGATGAGGGCCCTGGCTATGTATTGCCAAACAAAATTATTCTTGAAATTGCTAAGCAGATGCCTGTCATTATAAGCAATTTACGGAGAATAGTAGGAAGATCAAAGCTCCCATATGTTGAGCACAGCCTTGATGTCATTGTCAACATTGTTAGACATTCTATGCAAAATACTGTTGCCTTTGAAGAGGCTGCACTGCGTTTGAAGGAAGAACATGCAGCAAGTTTGTCAAATGTAGTACCCGTTAAAGATGGAACTGAAGTACCTCAGACGCTAAACTTAAAGGTTGGATGTGCAGCAACAGGAAGCATTGGAATTGAAAATGACACCTATGCTGATATCTCACAGAATTATTTGTTTTCTTCTGATAACCTGGAGGAGGAACGTTTTCGGCATCAAGATACAGATGGACAAGGAAAAGTTATACCGGATTGTCTCACTTCAGATTTCCCAAGTGGCAGTTCTACTATTCCAGAGAAGAATCGAGATTCTGCAAACGTTATTGCACTCTCTACAGAGAAGGGCAATGGAGATGTGCTAAAACTGCCCACTCGTGCTGTTGATGCGCCACTGCTGGGCTATCCGATTTCAGAATGGAAACCCGATCCTTATAAAAAGGTCAAGGAGGAGATCGAGCTAGAACAGATTAAACCGTCGGACAGTATTCCATCCCTTTTTGTTTTGGACAATAGTGAGAAGTCAAAACTAGTAGAAACTCGAAGTGTAGCATCTGAAACATCAGATCCACAGAAGAAACCTGTTTCAGGTTCAGTTTCTACCTCCACCCCCTTTGGGATTGTAACGGTAATCTCTGATTCAGACTCGGAGGATATGCTGCAGCTAGAAAACTCCAACAACCACCCAGGGGAAAATTCTCCGGTGCCCAGGAAAAGAAGATGA 2175 0.4377 MDFDHHLTELSTSSPCIPSGEDFHFYYKFTEFRRPIEEIARRTQSMLNRIGSAENIWGRGSTFPADVDDAYEWLVNANDDVFELVEELVDELRRIKKEEGEEFENDLEAKTKVPFHIPTIKKPQYAYNIVVDNANQPFEHVLLEKSEDGQRFIHPLEKLSVLDFVDKENIENLVPIKPPSIECTPFKLVEEVKGLKELAAKLSTVNEFAVDLEHNHYRSFQGLTCLMQISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKLERYSLQYLLQHFCGITANKEYQNADWRLRPLPDVMLRYGREDTHYLLYIYDSMRIKLFTLSKESEGCDNPLMEVYKRSYDVCMQLYEKDLLTENSYLRIYGLRGAGFNAQQLAVVSGLWEWRDGHARADDEGPGYVLPNKIILEIAKQMPVIISNLRRIVGRSKLPYVEHSLDVIVNIVRHSMQNTVAFEEAALRLKEEHAASLSNVVPVKDGTEVPQTLNLKVGCAATGSIGIENDTYADISQNYLFSSDNLEEERFRHQDTDGQGKVIPDCLTSDFPSGSSTIPEKNRDSANVIALSTEKGNGDVLKLPTRAVDAPLLGYPISEWKPDPYKKVKEEIELEQIKPSDSIPSLFVLDNSEKSKLVETRSVASETSDPQKKPVSGSVSTSTPFGIVTVISDSDSEDMLQLENSNNHPGENSPVPRKRR* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00407 724 MobiDBLite consensus disorder prediction 665 716 - -
Lapu1g00407 724 Pfam 3'-5' exonuclease 189 353 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lapu1g00407 724 MobiDBLite consensus disorder prediction 664 724 - -
Lapu1g00407 724 FunFam Putative exosome component 10 392 488 - -
Lapu1g00407 724 Gene3D HRDC domain 394 487 IPR044876 -
Lapu1g00407 724 Gene3D - 113 393 IPR036397 GO:0003676
Lapu1g00407 724 SMART hrdc7 405 485 IPR002121 GO:0003676
Lapu1g00407 724 SMART 35exoneu6 186 355 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lapu1g00407 724 Pfam PMC2NT (NUC016) domain 12 93 IPR012588 GO:0000176|GO:0006396
Lapu1g00407 724 SUPERFAMILY Ribonuclease H-like 120 385 IPR012337 -
Lapu1g00407 724 ProSiteProfiles HRDC domain profile. 405 486 IPR002121 GO:0003676
Lapu1g00407 724 SUPERFAMILY HRDC-like 390 481 IPR010997 GO:0000166|GO:0044237
Lapu1g00407 724 Coils Coil 78 98 - -
Lapu1g00407 724 FunFam Protein RRP6-like 2 isoform A 119 390 - -
Lapu1g00407 724 Pfam HRDC domain 408 461 IPR002121 GO:0003676
Lapu1g00407 724 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 6 537 IPR045092 GO:0000175|GO:0000467
Lapu1g00407 724 CDD Rrp6p_like_exo 182 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00407 Lapu-Chr1 14346449 14367009 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00407 K12591 - gmx:100804872 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00407 1 14346449 14367009 Lapu1g00407 1 14346449 14367009 ECH