Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00391 ATGGCAGAGAGCAAGAAGCCTGTGACATCTCTAACGGATTCATGGTCTGTAACGGACACAGTGAATGGAACACACAACTTTGAGTTGAAGGGTTATTCTCTAACAAAGGGAATGGGTATTGGAAAATTCATTGCAAGCGAGAAGTTCGCAGTGGGAGGGCATCAGTGGGCCATATACTTCTACCCAGATGGCAAGGTCCCCAGTGATAATGGTGTTTATGTTTCCATCTTTGTGGCTCTTGTTTCCGAGAGCGTCGATGTTCGTGCACTGTTCGAACTCAAGTTGCTCGACCAAAGCGGAAAAGAGAATGATTTGGTTTATAGCCACTTCGGTCGCAGCCTCGAGAATGGCCCTCACACTATCAAAAGCCGTGGGTGCATGTGGGGATATAAGCGGTTTTTCAAACGAAAAGACCTTGAGGCGACAACTTTTGTAAAGGATGACTGCTTGAAAATCAGTTGCACTGTTGGTGTTCTGGTGATGTCGTCTACTGATTCTTCTATGTCAAACGCAATACATATTCCTGAATCTGATATAGGAGCAGATTTAGGGATGATGTTAGAGCATCAGGAATTATGTGATGTTACTTTCTCCGTTGGTGGAGAAAGGTTTCGTGCACATAAGCTTATTTTAGGTGCTCGATCAACACTGTTTGAGACCTGGATTTCTAATGGGATGGGGAAGGATGATAGGGTGATAGTTCTCAATGACATAGAGCCAAAAGTTTTCAAGGTAGCATGTGCTACTTGA 750 0.4413 MAESKKPVTSLTDSWSVTDTVNGTHNFELKGYSLTKGMGIGKFIASEKFAVGGHQWAIYFYPDGKVPSDNGVYVSIFVALVSESVDVRALFELKLLDQSGKENDLVYSHFGRSLENGPHTIKSRGCMWGYKRFFKRKDLEATTFVKDDCLKISCTVGVLVMSSTDSSMSNAIHIPESDIGADLGMMLEHQELCDVTFSVGGERFRAHKLILGARSTLFETWISNGMGKDDRVIVLNDIEPKVFKVACAT* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00391 249 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 21 159 IPR008974 GO:0005515
Lapu1g00391 249 SUPERFAMILY TRAF domain-like 19 158 - -
Lapu1g00391 249 CDD MATH 23 156 IPR002083 GO:0005515
Lapu1g00391 249 ProSiteProfiles MATH/TRAF domain profile. 22 156 IPR002083 GO:0005515
Lapu1g00391 249 SMART math_3 29 139 IPR002083 GO:0005515
Lapu1g00391 249 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 16 245 IPR045005 GO:0016567
Lapu1g00391 249 ProSiteProfiles BTB domain profile. 193 249 IPR000210 GO:0005515
Lapu1g00391 249 Pfam BTB/POZ domain 186 244 IPR000210 GO:0005515
Lapu1g00391 249 SUPERFAMILY POZ domain 173 245 IPR011333 -
Lapu1g00391 249 Gene3D Potassium Channel Kv1.1; Chain A 160 247 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00391 Lapu-Chr1 14075059 14075952 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00391 K10523 - gmx:100809683 328.946