Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00385 ATGCTATCATGTCCTAGCAGCTCCCTCCATGGCCTCGCCACGCTGCAACGCCATTCCCAACCATCTCACTTCCTCCTCTCCAATTCCCTCTTCTTCCCTCCGTCCTCTCGCCTCGCCGCTTCCCGCAAATGCAACTTCCGCTCGCTTCTTTCCGGCAGGAACAACCGCCGCTCCGCCGTCAGAGCATCCGCGGACTCACCGGAGGTGTCGGAGTCCGTCATCGGCGACGGTGGCTTACTACAACCGTATTCCGTGAAGATTCCCGTTGGTGATAGACATATTTTGGTTGAGACTGGTCATATAGGAAGACAAGCAAGTGGCTCTGTTACAGTGACAGATGGAGAGACTATTGTGTACACAACTGTTTGCTTGGATGATGTTCCTAGTGAACCATCTGACTTTTTCCCTCTTTCTGTTCATTATCAAGAGCGATTTTCAGCAGCTGGTCGCACTAGTGGAGGGTTTTTTAAGCGAGAAGGAAAGACAAGAGACCACGAGGTTCTTATTTGTAGATTAATTGATAGGCCTCTGCGTCCTACCATGCCAAAGGGATTCTATCATGAAACTCAAATATTATCTTGGGTTTTGAGCTATGATGGACTGCACTCGCCTGATTCTTTGGCTGTCACTGCTGCTGGTATAGCAGTTGCACTTTCAGAAGTTCCAATGTCAAAAGCAGTTGCTGGGGTTCGTGTTGGTCTTGTTGGTGATAAATATATAGTAAATCCTACAACTAAGGAGATGGAAAACTCTGAATTGGACCTCTTGTTGGCTGGCACAGATGATGCAATACTGATGATCGAGGGCTATAGCAATTTTATTCCAGAAGAGAAGTTACTCAGAGCTGTGGAAGTTGGTCAGGATGCAGTGCAAGCAATCTGCAAGGAGGTAGAAGCTTTGGTTAAGAAGTGTGGCAAGCCAAAGATGTTGGATGCCATCAAGTTACCTCCTCCTGAACTTTATGAACATGTTGAAAAAATTGCCGGTGATGAGATAGTAAAAGTTCTTCAGATTAGAAACAAAATACCCAGAAGAAAAGCCCTCTCATCATTAGAAGAAAAGGTTCTGAATATACTCACAGAAAACGGGTTTGTCTCAAATGACTCAAAACTAAGGAGTAGTTCTGAGACCATTCAGGTGATTCTTGAGGATGAGGATGAAGATGAGGAAGTAATTGTTGAGGGTGAAGTTGATGAAGGTGATGTTCATATAAAGCTTACTTCACACAAACCAGCACTTTTATTTTCTGAGGTAGATGTCAAGTTGGTATTTAAGGAAGTTTCATCCAAATTTTTGAGGAAGCGCATAGTAGAGGGGGGTAAAAGGAGCGATGGGCGAACACATGATGGAATACGTCCAATCAACTCTAGATGTGGTCTATTACCTAGAGCACATGGAAGTGCTCTTTTTACAAGAGGCGAAACACAGTCACTAGCAGTTGTTACACTAGGGGATAAACAAATGGCACAAAGAATAGATGGTCTTGATGGTGATGATGAATTAAAGAGGTTCTATTTACAGTATTCATTTCCTCCTTCATCTGTTGGGGAAGTTGGTCGTATTGGTGCCCCAAGTAGAAGAGAAATTGGTCACGGGATGCTTGCTGAGAGATCCCTTGAACAAATTTTGCCTTCAGAAAATGATTTCCCTTACACTATACGTGTTGAGAGTACTATCACAGAAAGCAATGGCTCTTCAAGCATGGCTTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGTGTTCCATTGCTGGAATTGCAATGGGTATGGTTCTGGACACCAAGGAATTTGGTGGAGATGGAACTCCGCTTATTCTTTCTGACATAGTTGGATCTGAAGATGCATCTGGAGATATGGATTTCAAGGTTGCTGGAAATGAAGATGGCATAACAGCATTTCAAATGGACATTAAGGTGGGTGGAATCACATTGCCCATCATGAGAAAGGCACTCCTACAAGCAAGAGATGGCAGGAAGCATATACTTGAAGCAATGATGAATAGCTCACCTCCTCCAGCAAATAGGCTTTCCAAATATGCTCCTCTGATACACGTTATGAAGGTAAGACCGGATAGAGTAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTCAAGAGCATTATTGAGGAATCTGGAGTAGAGGCTATTGATGCAGATGATAATGGCACTGTGAAAATATTTGCAAAAGATTTGCCTAGTTTAGAGAGGTCTAAAGCTATTATTAGTAGTTTGGCGATGGTTCCAACTATTGGTGATATATATAGGAACTGTGAAATCAAATCAATAGCTTCATATGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTTTGTCATATCAGTGAATTGAGTTCAGGTTGGCTACCAAAGGCAGAAGATGTGTTCAAAGTGGGAGATCGCATTGATGTAAAGCTTATAGAGGTAAATGAAAAGGGCCAGCTGCGCCTGAGTCACCGAGCACTGCTTCCTGATACAGATTCAGACAACTCTAATGTTAAACAGTCTACCGGTGAACTAGCTGGCGACACAGAAACTTCACCAAAATCACCTGAAAAGTCTAAGGATAAGTCTAGCACTCCCAAAATCACAGCCTCTTCTAAAAGGAGTTCAGAGGATGATTCTGTGCTTCCATCTAAAAAGTTTGTCAGGAGATTGGTCAGCTCTTCCCAGGATAAGCCTTTCACTAACAAAGACAAAACAAAGAAGAGTAGCAACAAAGCAGTTGGTAGTGTGTCTGTCAAAGATGAAAGCAGTTTGGTTAGTGGAGAGGCGTAA 2796 0.4317 MLSCPSSSLHGLATLQRHSQPSHFLLSNSLFFPPSSRLAASRKCNFRSLLSGRNNRRSAVRASADSPEVSESVIGDGGLLQPYSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTTVCLDDVPSEPSDFFPLSVHYQERFSAAGRTSGGFFKREGKTRDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPMSKAVAGVRVGLVGDKYIVNPTTKEMENSELDLLLAGTDDAILMIEGYSNFIPEEKLLRAVEVGQDAVQAICKEVEALVKKCGKPKMLDAIKLPPPELYEHVEKIAGDEIVKVLQIRNKIPRRKALSSLEEKVLNILTENGFVSNDSKLRSSSETIQVILEDEDEDEEVIVEGEVDEGDVHIKLTSHKPALLFSEVDVKLVFKEVSSKFLRKRIVEGGKRSDGRTHDGIRPINSRCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRIDGLDGDDELKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGMLAERSLEQILPSENDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGMVLDTKEFGGDGTPLILSDIVGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPIMRKALLQARDGRKHILEAMMNSSPPPANRLSKYAPLIHVMKVRPDRVNLIIGSGGKKVKSIIEESGVEAIDADDNGTVKIFAKDLPSLERSKAIISSLAMVPTIGDIYRNCEIKSIASYGVFVEIAPGREGLCHISELSSGWLPKAEDVFKVGDRIDVKLIEVNEKGQLRLSHRALLPDTDSDNSNVKQSTGELAGDTETSPKSPEKSKDKSSTPKITASSKRSSEDDSVLPSKKFVRRLVSSSQDKPFTNKDKTKKSSNKAVGSVSVKDESSLVSGEA* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00385 931 Gene3D - 72 307 IPR027408 -
Lapu1g00385 931 CDD S1_PNPase 757 825 - -
Lapu1g00385 931 Gene3D K Homology domain, type 1 685 756 IPR036612 GO:0003723
Lapu1g00385 931 SMART S1_6 755 826 IPR022967 -
Lapu1g00385 931 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 682 750 IPR036612 GO:0003723
Lapu1g00385 931 SUPERFAMILY Nucleic acid-binding proteins 753 831 IPR012340 -
Lapu1g00385 931 CDD RNase_PH_PNPase_1 83 309 - -
Lapu1g00385 931 Pfam 3' exoribonuclease family, domain 2 226 288 IPR015847 -
Lapu1g00385 931 Pfam S1 RNA binding domain 764 826 IPR003029 GO:0003676
Lapu1g00385 931 SUPERFAMILY Ribosomal protein S5 domain 2-like 83 222 IPR020568 -
Lapu1g00385 931 ProSiteProfiles S1 domain profile. 757 826 IPR003029 GO:0003676
Lapu1g00385 931 FunFam Polyribonucleotide nucleotidyltransferase 684 753 - -
Lapu1g00385 931 SUPERFAMILY Ribonuclease PH domain 2-like 578 675 IPR036345 -
Lapu1g00385 931 FunFam Polyribonucleotide nucleotidyltransferase 1, chloroplastic 757 828 - -
Lapu1g00385 931 FunFam Polyribonucleotide nucleotidyltransferase 81 311 - -
Lapu1g00385 931 MobiDBLite consensus disorder prediction 830 850 - -
Lapu1g00385 931 SUPERFAMILY Ribonuclease PH domain 2-like 224 309 IPR036345 -
Lapu1g00385 931 CDD KH-I_PNPase 685 754 - -
Lapu1g00385 931 CDD RNase_PH_PNPase_2 451 678 - -
Lapu1g00385 931 NCBIfam polyribonucleotide nucleotidyltransferase 416 827 IPR012162 GO:0003723|GO:0004654|GO:0006402
Lapu1g00385 931 SMART kh_6 686 751 IPR004087 GO:0003676
Lapu1g00385 931 MobiDBLite consensus disorder prediction 826 931 - -
Lapu1g00385 931 ProSiteProfiles Type-1 KH domain profile. 687 747 - -
Lapu1g00385 931 MobiDBLite consensus disorder prediction 912 931 - -
Lapu1g00385 931 Gene3D - 757 828 IPR012340 -
Lapu1g00385 931 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 81 829 IPR012162 GO:0003723|GO:0004654|GO:0006402
Lapu1g00385 931 Gene3D - 402 684 IPR027408 -
Lapu1g00385 931 FunFam Polyribonucleotide nucleotidyltransferase 388 683 - -
Lapu1g00385 931 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 60 871 IPR012162 GO:0003723|GO:0004654|GO:0006402
Lapu1g00385 931 SUPERFAMILY Ribosomal protein S5 domain 2-like 424 596 IPR020568 -
Lapu1g00385 931 Pfam 3' exoribonuclease family, domain 1 451 584 IPR001247 -
Lapu1g00385 931 Pfam 3' exoribonuclease family, domain 1 92 222 IPR001247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00385 Lapu-Chr1 13920390 13967042 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00385 K00962 - gmx:100785430 1455.65