Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00368 ATGGCCTCAAAGTTGGTTTTGCAGAGAAGGCTCTTCAGGTTTTATCAATTGTTACAGCCTTCTTCTTCTTCCATTCAGGCGATCCCATTCCTTTCTGCAAAATCTTCAGAATGCACATCTCTCTACAGGAAAAATAGCCTTCTTCCTCCTCTCTCATCTTCTAGAAACTTGTCCTCTGGCAGTTTTAATCTTGATGAATCTCAAGCACCCCTGACTATTGATTACCGTTCTCTACTGGACGAGGGTGAATTCCATAGACTGGCTGATTCCACAATACATAGCGTACAAGAGAAATTAGAGGACTATGGAGACTTAGTTGAAGTTGATGGATTCGACATAGACTATGGGAATGATGTTTTGACTGTAAAACTTGGAGATCTTGGCACCTATGTATTGAACAAACAAACACCAAATCGACAACTTTGGCTGTCTTCTCCGCTGAGTGGTCCGTCAAGGTTTGATTGGGATCCGGATACCAAAGCTTGGATTTATAGACGGAACAAAGCAAACTTGTATGAAATTTTGGAAGGTGAGTTGGAGCAGTTATGCGGCAAACCTTTAGTTCTTTCCTAA 573 0.4154 MASKLVLQRRLFRFYQLLQPSSSSIQAIPFLSAKSSECTSLYRKNSLLPPLSSSRNLSSGSFNLDESQAPLTIDYRSLLDEGEFHRLADSTIHSVQEKLEDYGDLVEVDGFDIDYGNDVLTVKLGDLGTYVLNKQTPNRQLWLSSPLSGPSRFDWDPDTKAWIYRRNKANLYEILEGELEQLCGKPLVLS* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00368 190 SMART Frataxin_Cyay_2 79 190 IPR002908 GO:0008199|GO:0016226
Lapu1g00368 190 NCBIfam iron donor protein CyaY 81 188 IPR002908 GO:0008199|GO:0016226
Lapu1g00368 190 ProSitePatterns Frataxin family signature. 131 145 IPR020895 -
Lapu1g00368 190 Coils Coil 190 190 - -
Lapu1g00368 190 FunFam Frataxin, mitochondrial 72 190 - -
Lapu1g00368 190 CDD Frataxin 79 187 - -
Lapu1g00368 190 Pfam Frataxin-like domain 79 186 IPR002908 GO:0008199|GO:0016226
Lapu1g00368 190 SUPERFAMILY Frataxin/Nqo15-like 70 186 IPR036524 GO:0008199|GO:0016226
Lapu1g00368 190 ProSiteProfiles Frataxin family profile. 79 187 IPR002908 GO:0008199|GO:0016226
Lapu1g00368 190 PANTHER FRATAXIN 45 189 IPR002908 GO:0008199|GO:0016226
Lapu1g00368 190 NCBIfam frataxin 83 180 IPR017789 GO:0004322|GO:0005739|GO:0006879|GO:0018283
Lapu1g00368 190 Gene3D Frataxin/CyaY 72 190 IPR036524 GO:0008199|GO:0016226
Lapu1g00368 190 PRINTS Frataxin signature 132 147 IPR002908 GO:0008199|GO:0016226
Lapu1g00368 190 PRINTS Frataxin signature 79 97 IPR002908 GO:0008199|GO:0016226
Lapu1g00368 190 PRINTS Frataxin signature 117 132 IPR002908 GO:0008199|GO:0016226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00368 K19054 - gmx:100815916 294.664