Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00363 ATGAAAATGGCGCTATCTTCTTCCTCACCGTGTTGGTGTTCTTCCCCTCCACCGCTTCCTCCCTTCGTCCAACAACACCGTTTTGTCACTCTCAAACCCTATGCTCGTTCTCAACCTCACTACACCCTCGCCGCCGCCGACATCAGACCTTCTACTCCGTTAGTGCACTCCACCAGACAAGGGTTTGACACCGTCAACATTGCCGAAGATGTCACTCAGTTAATTGGAAATACACCAATGGTATACCTGAATAAAGTTACGGAGGGTTGTGTGGCTAACATTGCTGCCAAACTTGAGTCTATGCAACCATGCCGCAGTGTTAAGGACAGAATTGGCTATAGCATGTTATCTGATGCTGAAGAGATAGGAGCAATTTCTCCGGGGAAGACCGTTTTGGTTGAACCAACTACGGGAAATACAGGTCTTGGCATTGCTTTTGTTGCAGCAACAAAAGGGTACAAACTTATTGTCACAATGCCTGCTTCTGTTAATGTTGAGAGAAGAATCCTTTTACGTGCATTTGGTGCAGAGGTTATTTTGACTGATGCTGAGAAGGGGTTAAAAGGGGCAGTTGACAAAGCTGAAGAAATTGTTCGCAGCACACCCAACGCTTACATGTTTCGACAGTTCGATAATATGACTAATACCAAGATCCACTTCGAAACTACAGGGCCAGAGATATGGGAGGATACCATGGGTAATGTTGATGTATTAGTTGCTGGGATTGGAACTGGTGGCACCATTACTGGCACTGGACGTTATCTGAAAATGATGAACCAAAATATAGAGGTGGTTGGGGTGGAACCTGCAGACAGAAGTGTCGTTTCGGGTGACAGTCCTGGTTTCATGCCAAGCATTTTGGATATCAAACTGCTTGATGAAGTTATCAAGGTTACAAATGTTGAAGCTGTTGAAATGGCAAGGAGATTAGCATTGAAAGAAGGTTTGCTGGTTGGGATTTCTTCAGGAGCTGCAGCTGCCGCCGCCATAAATTTAGCAAGACGGCCCGAGAATTCTGGGAAACTTATTGTGGTTATTTTTCCGAGTTTCGGTGAGAGATATATTTCTACTGCTCTCTTCCAATCTATTTACGAAGAGGTTCAGAAAATGTAA 1113 0.4474 MKMALSSSSPCWCSSPPPLPPFVQQHRFVTLKPYARSQPHYTLAAADIRPSTPLVHSTRQGFDTVNIAEDVTQLIGNTPMVYLNKVTEGCVANIAAKLESMQPCRSVKDRIGYSMLSDAEEIGAISPGKTVLVEPTTGNTGLGIAFVAATKGYKLIVTMPASVNVERRILLRAFGAEVILTDAEKGLKGAVDKAEEIVRSTPNAYMFRQFDNMTNTKIHFETTGPEIWEDTMGNVDVLVAGIGTGGTITGTGRYLKMMNQNIEVVGVEPADRSVVSGDSPGFMPSILDIKLLDEVIKVTNVEAVEMARRLALKEGLLVGISSGAAAAAAINLARRPENSGKLIVVIFPSFGERYISTALFQSIYEEVQKM* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00363 370 Gene3D - 73 356 IPR036052 -
Lapu1g00363 370 NCBIfam cysteine synthase A 72 360 IPR005859 GO:0004124|GO:0006535
Lapu1g00363 370 FunFam Cysteine synthase 192 356 - -
Lapu1g00363 370 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 67 364 IPR036052 -
Lapu1g00363 370 NCBIfam cysteine synthase 72 360 IPR005856 GO:0004124|GO:0006535
Lapu1g00363 370 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 97 115 IPR001216 GO:0006535
Lapu1g00363 370 Gene3D - 109 211 IPR036052 -
Lapu1g00363 370 Pfam Pyridoxal-phosphate dependent enzyme 71 348 IPR001926 -
Lapu1g00363 370 FunFam Cysteine synthase 102 181 - -
Lapu1g00363 370 CDD CBS_like 76 356 - -
Lapu1g00363 370 PANTHER CYSTATHIONINE BETA-SYNTHASE 67 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00363 Lapu-Chr1 13287901 13291894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00363 63 370 Miscellaneous Gene Families AT3G03630 78.571 2.71e-168 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00363 K22846 - gmx:100819100 608.216