Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00356 ATGGCCACTGTTCTCAGAAACCCCACTTTCCGGCCACCGCCTCCGTCGCGCGCCGCCAAGTCGCCGAAACCCTCGCGCGTCGCCGTTGCCTCGTTCAGACAGAGCACTACCTGCAGGAGAAAACCCTCGCTCCTCTTCTCTCTGCGGTTCCCTACTGTTCCCTCTCTGCGGTTCGTCAGGTTCGTTCCCTTCGCTTTCGATGGCGACACCGAGGCCCCGCAGGTTCAGGAACCGGAGGTTCAGGTTCTGGACCCTTTAGATGGTGCTGTTGACGTAAAGGACAGTGCAAGTGATAATGAGGTTAGCGATGCTGATGAAGTGTCTGCTTCACCTTTTGTATTGTTACTTCAATCATACAAAGAAGCATTAGCTAGTAAAGATGAAGTCAAAATCGCTGAGTTGGAATCGTCTTTAAAATCCATTGAAGATGAGCAAATAGAACTTGAAGGGAAAATAGCTGCTTTATCTGAAGAGTTGTCAATAGAAAAGGATCGGATTCTGAGGATTAGTGCAGACTTTGACAATTTCCGGAAGAGGACAGAGAGAGATCGCCTTTCACTGGTCACAAATGCTCAGGGTGAAGTTGTGGAAAGTTTATTGCCTGTATTGGATAATTTTGAGAGAGCAAAATCCCAGATAAAGGTAGAGACAGAGGGAGAGGAGAAAATAAACAACAGCTATCAGAGCATATATAAACAGTTCAATGAAATTCTAACTTCACTTGGAGTTGAACCAGTGGAGACAATTGGAACACCATTTGATCCATTGCTCCATGAAGCAATTATGCGTGAGGATTCTGCTGAATTTGAGGATGGGATCATAATTCAAGAATTCAGAAAAGGTTTTAAACTTGGTGACCGTCTCTTGCGTCCATCAATGGTGAAGGTATCAGCTGGTCCAGGACCTGCAAAGCCTGAACAAGAAGCACCGCAAGAAGAACAAGTTAACACTGAAATCTCCGAGGACAGTAAAGAGAACGAGGGTGGGACAGAAGCAAAGTCTGCTTGA 1008 0.4623 MATVLRNPTFRPPPPSRAAKSPKPSRVAVASFRQSTTCRRKPSLLFSLRFPTVPSLRFVRFVPFAFDGDTEAPQVQEPEVQVLDPLDGAVDVKDSASDNEVSDADEVSASPFVLLLQSYKEALASKDEVKIAELESSLKSIEDEQIELEGKIAALSEELSIEKDRILRISADFDNFRKRTERDRLSLVTNAQGEVVESLLPVLDNFERAKSQIKVETEGEEKINNSYQSIYKQFNEILTSLGVEPVETIGTPFDPLLHEAIMREDSAEFEDGIIIQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQEAPQEEQVNTEISEDSKENEGGTEAKSA* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00356 335 Coils Coil 124 158 - -
Lapu1g00356 335 PANTHER GRPE PROTEIN 22 301 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lapu1g00356 335 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 147 242 IPR013805 -
Lapu1g00356 335 PRINTS GrpE protein signature 195 210 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lapu1g00356 335 PRINTS GrpE protein signature 277 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lapu1g00356 335 PRINTS GrpE protein signature 250 265 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lapu1g00356 335 PRINTS GrpE protein signature 167 183 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lapu1g00356 335 Hamap Protein GrpE [grpE]. 97 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lapu1g00356 335 Gene3D Head domain of nucleotide exchange factor GrpE 242 297 IPR009012 GO:0006457
Lapu1g00356 335 CDD GrpE 163 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lapu1g00356 335 MobiDBLite consensus disorder prediction 1 26 - -
Lapu1g00356 335 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 243 299 IPR009012 GO:0006457
Lapu1g00356 335 FunFam GrpE protein homolog 124 240 - -
Lapu1g00356 335 MobiDBLite consensus disorder prediction 293 335 - -
Lapu1g00356 335 Pfam GrpE 138 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lapu1g00356 335 ProSitePatterns grpE protein signature. 253 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lapu1g00356 335 Gene3D - 126 240 IPR013805 -
Lapu1g00356 335 MobiDBLite consensus disorder prediction 317 335 - -
Lapu1g00356 335 FunFam Protein GrpE 242 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00356 Lapu-Chr1 13190395 13195831 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00356 K03687 - gmx:100820521 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00356 1 13190395 13195831 Lapu1g00356 1 13190395 13195831 ECH