Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu1g00303 | ATGACGGCTCAAACCCAAGAGGAGCTTCTTGCCCAACACCTCGAACAGCAAAAGATCCATCATGATGAGCCTGTAGTTGAGGATGATGATGATGAGGAAGAAGAGGATGACGATGATGATGATGATGATGAACATGGCGAAGGACTAGAAGGTGATGCATCTGGTAGGTCCAAGCAGACCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTCAAACTTGGAATGAAACCTGTCACAGGTGTCAGTCGAGTTACAGTAAAGAAGAGCAAGAATATCCTGTTTGTTATTTCAAAGCCAGACGTTTTCAAGAGTCCAACTTCTGATACATACATTATATTTGGGGAAGCTAAGATTGAAGACTTGAGCTCACAGCTACAAACTCAGGCAGCAGAGCAATTCAAGGCTCCTAATGTAAGCAATGTAGGATTGAAGCCTGAATCCTCAGCTATTGCTCAAGATGATGAGGAAGTGGATGAGGCTGGAGTAGATCCCAAGGATATAGAGCTGGTGATGACTCAAGCTGGTGTGTCAAGACTTAAAGCTGTTAAGGCACTCAAGGCAGCCGGGGGCGACATTGTTGCTGCTATTATGGAGCTAACTAATTAA | 606 | 0.4455 | MTAQTQEELLAQHLEQQKIHHDEPVVEDDDDEEEEDDDDDDDDEHGEGLEGDASGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNVSNVGLKPESSAIAQDDEEVDEAGVDPKDIELVMTQAGVSRLKAVKALKAAGGDIVAAIMELTN* | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu1g00303 | 201 | PANTHER | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED | 19 | 200 | IPR016641 | GO:0005854 | |
| Lapu1g00303 | 201 | MobiDBLite | consensus disorder prediction | 49 | 70 | - | - | |
| Lapu1g00303 | 201 | MobiDBLite | consensus disorder prediction | 26 | 48 | - | - | |
| Lapu1g00303 | 201 | Gene3D | - | 69 | 122 | IPR038187 | - | |
| Lapu1g00303 | 201 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - | |
| Lapu1g00303 | 201 | Pfam | HYPK UBA domain | 162 | 200 | IPR044034 | - | |
| Lapu1g00303 | 201 | ProSiteProfiles | NAC A/B domain profile. | 60 | 125 | IPR002715 | - | |
| Lapu1g00303 | 201 | CDD | UBA_NACA_NACP1 | 155 | 200 | - | - | |
| Lapu1g00303 | 201 | FunFam | Putative nascent polypeptide-associated complex subunit alpha | 162 | 199 | - | - | |
| Lapu1g00303 | 201 | SMART | NAC_2 | 63 | 119 | IPR002715 | - | |
| Lapu1g00303 | 201 | FunFam | Nascent polypeptide-associated complex (NAC), alpha subunit | 70 | 122 | - | - | |
| Lapu1g00303 | 201 | Pfam | NAC domain | 63 | 118 | IPR002715 | - | |
| Lapu1g00303 | 201 | Gene3D | - | 162 | 199 | - | - | |
| Lapu1g00303 | 201 | CDD | NAC_NACA | 74 | 121 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu1g00303 | Lapu-Chr1 | 11904949 | 11908026 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu1g00303 | K03626 | - | gmx:100791967 | 321.242 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lapu1g00303 | 1 | 11904949 | 11908026 | Lapu1g00303 | 1 | 11904949 | 11908026 | ECH |