Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00301 ATGGCCAAAGGCGTAATCTCAGATGAAGAAGACGACGTCGAGCTCGACGAGGAAGAGAGGGAACCCATTGATGGAGACGAATTGGAAGAAGGGCGTGATGTGGATAATGAAGATGAATACGAAGAAGATGAAGGGCAGGATGAGTACGAAAATGATGGATTTATTGTGGATGACATTGAAGATGAAGAGGAGCAAGACGAAGAAGAGAGAGCAGACAGTGATGATGAGCGACAGAAGAAGAAAAAGAGGAAGAAAAAGGAAGAGTATGTCCTTGATGAAGATGATTATGAGTTGCTGGAGGACAATAATATAAATATTCACCGTCGAAAGGAGAGCAAAAAGTTTAAGCGGCTGAAAAAAGGCCGAAGGGACACTGAGGAGGAGCCCTCTGGGTTGTCTGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAGCAAGGAGAGGAGGAAGAGGATGCTGACATTGGAGAAGATGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGAGCTCCGATGAGGCAGAGGAAGCTGAAGAAAAAGAAAACTAGGCAGGCTCCTGGAGTCTCTTCCTCAGCTTTACAAGAAGCTCAAGAATTATTTGGTGATCCAGATGAGTTGATTCTGAATCGCCAGAAAAATCTTGAAATGAGTGAATACAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTGTCTGAGAAATATATGACAGAGCAGGATGACCAAATTAGGGAGCTTGATATTCCAGAGAGAATGCAGATATCAGATGAAAGTACTGGTGCCCCTCCGTTGGATGGAAGTAGTATAGATGAAGAGAGTCAATGGATAGTTAATCAACTTGGAAATGGAGCAGTCCCTTGGATTTGCAAGAAGGTCCCAAACTCCCAAAATAATGAAAAGGACGACCTACCTATCAACAAAGATGATATTATCAGATTTTTGGAACTGCATCATGTGCAAAAATTAGATATTCCTTTCATTGCTATGTATCGGAAGGAGGAATGCTTAAGCCTATTAAAAGACCTGGAGCAACCTGAAGCTGGTGACGAGAATGACAAGACACCTACTCTGAAATGGCACAAGGTTCTTTGGGCTCTTCAGGACTTGGACAAGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTCGAGTCATACTATAGTAAACGGTTTGAAGAAGAGTCCCGTCGCGTATATGATGAAACAAGACTAAACTTGAATCGTCAATTGTTTGAGTCAGTCATGAGATCACTGAAGGAAGCAGAGTCTGAGAGGGAGGTTGATGATGTTGATTCCAAGTTCAACTTGCATTTCCCACCAGGTGAAGCTGGTGTTGATGAAGGACAATACAAGAGGCCGAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCAGGTCTATGGGAGGTTGCGAGCAGGTTCGGATGTAGTCCTGAACAACTTGGATTATGTCTAACTTTAGTTAAACTGCAAGAGTTGGAAGATCCAAAGGAAACACCTGAGGAGATGGCTTCTAACTTCACGTGTGCTATGTATGATACTCCTGAAGAAGTACTTAAATGTGCCAGGCACATGGCAGCTGTTGAGATAAGTTGTGAACCTAGCATTAGGAAACATGTTCGTAGCCACTTTCTTGACCATGCAGTTGTGTCAACTTGTCCTACTGCTGATGGAAATACAACAATAGATTCTTTCCATCAGTTTTCTGGGGTGAAGTGGCTGCGGGAGAAGCCATTGTCTAAGTTTGAAGATGTGCAATGGCTCCTTATACAGAAGGCAGAAGAGGAGAAACTCATTCAAGTTACAATTAAGTTGCCTGAGGAGTATCTTAATAAGCTGATAGACCAATTCAATGAGTATTATATTAGTGACAGTGTAAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGTTGATATTGCATGATGCCATTTTCCGATTCCTTTTACCATCAATGGAAAAAGAGGCAAGAGGTGTATTGGCAAGTAAAGCAAAGAATTGGTTACTTATGGAGTATGGGAAGGCATTATGGAATAAGGTTTCTGTGGGACCTTATCAACAGAAGGAAAATGATCTTGGCTCAGATGATGAGGCTGCTCTTAGGGTTATGGCATGCTGTTGGGGCCCTGGAAAGCCACAAACAACTTTTGTCATGTTAGATTCATCAGGAGAAGTGCTAGATGTGCTTTACACTGGATCCCTTACTTTTAGGTCACAGAATGTTAATGACCAACAACGGAAGAAGAATGACCAGGAACGAGTGTTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGGGCGGTGAACTTGTCTTGCACCCGTTTGAAGGAAGATATATATGAGGTTATTTTCAAGATGGTGGAGGAAAACCCTAGAGATGTTGGGCATGAAATGGATGGGCTCAGCATTGTCTATGGAGATGAATCTCTTCCTCGACTTTATGAAAATTCTCGAATTTCTTCAGAACAACTTCCTTCACAGCAAGGTATAGTGAGGCGGGCTGTTGCTCTTGGTCGTTATCTCCAGAACCCATTGGCAATGGTTGCAACATTATGTGGACCTAGAAAGGAAATCATGTCATGGAAATTGAGCCCTCTAGAGAGTTTTCTCAATCAAGACGATAAATTTGCAATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTAGCAATAAGTCATGAGTGGTTATTTGCTCCATTACAATTTATTTCCGGGCTTGGTCCAAGGAAGGCCGCATCCTTACAGAGATCTTTGGTGAGAGCTGGTGCCATTTTTACGCGGAAGGACTTTCTCACAGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGGTTGGCTGCTAGCAGCAGCCAATTTATTGATTTGCTGGATGATACAAGAATTCATCCTGAATCTTATATTCTTGCACAAGAGTTGGCCAAAGATGTGTATGAAGAAGATGGAACAGGTGATGCAAATGATGATGATGATGCACTTGAGATGGCCATAGAGCACGTGAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCTTCTGGGAAGAAACGTCAGAACAAGATACAAACTTTCTATGACATAAAGAGAGAATTAATCCAAGGTTTTCAGGATTGGCGCAATCAATATGAAGAACCAAGTCAGGATGAGGAATTCTATATGATTTCAGGTGAGACTGAAGAGACACTTGCTGAAGGAAAAATTGTCCAAGTCACAGTTCGAAGAGTGCAGGCTCAGAAAGCAATATGTGGGCTTGAATCTGGAATGACTGGAATCCTCATGAAGGAAGACTACACAGATGACTGGAGAGATGTAATTGAATTAAATGATCGGTTACACGAAGGTGACATGCTCACATGTAAAATCAAGTCAATTCAAAAGAATAGGTATCAAGTCTTCCTTGTGTGTAAGGACAGTGAAATGAGAAGTAATCGGTTACAGCATAACCGTGATATTGACCCCTATTACCATGAAGATCGGAGCTGCTTTCAGAATGATCAAGACAAAGCTCGGAAAGAAAAGGAACTTGCAAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCGCGATTCCAGAACATAACTGCAGATGAAGCAATGGAGTTCTTGTCTGACAAAGATCCTGGCGAAAGTATTATCCGTCCTAGTTCGCGTGGACCTTCATATCTTACTTTAACTCTTAAAATTAATGATGGAGTGTATGCCCATAAGGATATAGTCGAAGGTGGGAAGGAACACAAGGACATTACAAGCTTACTCCGAATCGGGAAGACACTAAAAATTGGAGACGACACTTTTGAGGATTTAGATGAGGTTATGGACCGTTATGTGGACCCTTTGGTGGCTCACTTGAAGACGATGCTAAACTATCGCAAATTTCGCAAGGGTACAAAATCAGAAGTTGATGAACTTTTGAGGATCGAGAAAGCTGAGCATCCTATGCGCATTGTCTATAGTTTTGGCATCTCCCACGAACATCCTGGCACATTTATATTAACTTATATAAGAAGTACAAATCCACACCACGAGTACATTGGACTGTACCCAAAAGGATTCAGGTTCAGGAAAAAGATGTTTGAGGACATTGATCGGCTTGTGGCATATTTTCAAAGGCATATTGATGATCCCCAGCACGATTCGGCTCCTTCCATTAGATCTGTTGCTGCTATGGTACCAATGCGTAGCCCTGCAGCTGGTGGCTCATCAGGGCCATCTGTGGGCGGTGGCTGGGGTGGTGGTTCAAACAGTGAAGGTGGTAGGAGAGGTCACTCTTATGATAGGGATAGATCTTCAACTCCTGGTTCCAGGACAGGACGTGGTGAGTATAGAAACAATGGGAATCAGGATGAACATCCTAGTGGGGTGCCTCGTCCATATGGTGGAGGTGGAGGTCGAGGACGAGGTCGTGGTCGAGGTTCTTACAACAACAGGGGACACAACTCCAACAATGAAAGGCAGGACTCTGGTTATGGGGGCAGCAGGTGGGGTTCTAATAGTACAAAGGATTCAGATGATGGTTTAAACAGTTTTCCGGGGGCTAAAGTTCAAAATTCTCCTGGAAGGGAAGCTTTCCCTGGTGGTTGGGGTGGGGGAAGTGGTGGTTGGGGAGGTGGAAGTGGTGGAGCTAATAACAATGGCAATGGTGTCTGGGGACAAGAGGTTGGTGGTGGTGGTGGTGGTGGTGATGGTGCTGGTCCAAGTGATGGTGATCAAGGAAGCTCTGGCTGGGGAACTGCCCCCAAGAAAGCAGCAACTGGGAACGGATGGGGGTCTGGAAATTCTGGTGGTTGGTGA 4971 0.4357 MAKGVISDEEDDVELDEEEREPIDGDELEEGRDVDNEDEYEEDEGQDEYENDGFIVDDIEDEEEQDEEERADSDDERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTEEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEYRETRLEDEFEPIVLSEKYMTEQDDQIRELDIPERMQISDESTGAPPLDGSSIDEESQWIVNQLGNGAVPWICKKVPNSQNNEKDDLPINKDDIIRFLELHHVQKLDIPFIAMYRKEECLSLLKDLEQPEAGDENDKTPTLKWHKVLWALQDLDKKWLLLQKRKSALESYYSKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGLCLTLVKLQELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKHVRSHFLDHAVVSTCPTADGNTTIDSFHQFSGVKWLREKPLSKFEDVQWLLIQKAEEEKLIQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWNKVSVGPYQQKENDLGSDDEAALRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTFRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEIMSWKLSPLESFLNQDDKFAMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASGKKRQNKIQTFYDIKRELIQGFQDWRNQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDVIELNDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQHNRDIDPYYHEDRSCFQNDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKINDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGDDTFEDLDEVMDRYVDPLVAHLKTMLNYRKFRKGTKSEVDELLRIEKAEHPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPAAGGSSGPSVGGGWGGGSNSEGGRRGHSYDRDRSSTPGSRTGRGEYRNNGNQDEHPSGVPRPYGGGGGRGRGRGRGSYNNRGHNSNNERQDSGYGGSRWGSNSTKDSDDGLNSFPGAKVQNSPGREAFPGGWGGGSGGWGGGSGGANNNGNGVWGQEVGGGGGGGDGAGPSDGDQGSSGWGTAPKKAATGNGWGSGNSGGW* 1657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00301 1656 FunFam Transcription elongation factor spt6 727 899 - -
Lapu1g00301 1656 SUPERFAMILY RuvA domain 2-like 908 998 IPR010994 -
Lapu1g00301 1656 Gene3D - 262 1000 - -
Lapu1g00301 1656 SUPERFAMILY Nucleic acid-binding proteins 1120 1200 IPR012340 -
Lapu1g00301 1656 Gene3D - 1006 1098 IPR042066 -
Lapu1g00301 1656 MobiDBLite consensus disorder prediction 1533 1574 - -
Lapu1g00301 1656 Pfam Acidic N-terminal SPT6 35 124 IPR028083 -
Lapu1g00301 1656 SUPERFAMILY RuvA domain 2-like 1011 1100 IPR010994 -
Lapu1g00301 1656 Pfam Holliday-junction resolvase-like of SPT6 737 892 IPR028231 -
Lapu1g00301 1656 Pfam SH2 domain 1214 1431 IPR035420 -
Lapu1g00301 1656 MobiDBLite consensus disorder prediction 9 71 - -
Lapu1g00301 1656 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 9 1532 IPR017072 GO:0032968
Lapu1g00301 1656 Coils Coil 56 79 - -
Lapu1g00301 1656 CDD SH2_Nterm_SPT6_like 1247 1335 IPR035019 -
Lapu1g00301 1656 SMART S1_6 1123 1196 IPR022967 -
Lapu1g00301 1656 Gene3D - 727 1117 IPR037027 GO:0006139
Lapu1g00301 1656 PIRSF Spt6 2 1503 IPR017072 GO:0032968
Lapu1g00301 1656 Gene3D SH2 domain 1233 1344 IPR036860 -
Lapu1g00301 1656 MobiDBLite consensus disorder prediction 139 161 - -
Lapu1g00301 1656 FunFam Transcription elongation factor Spt6 1004 1098 - -
Lapu1g00301 1656 CDD SH2_Cterm_SPT6_like 1346 1432 IPR035018 -
Lapu1g00301 1656 MobiDBLite consensus disorder prediction 72 90 - -
Lapu1g00301 1656 SUPERFAMILY Ribonuclease H-like 737 892 IPR012337 -
Lapu1g00301 1656 ProSiteProfiles S1 domain profile. 1125 1196 IPR003029 GO:0003676
Lapu1g00301 1656 FunFam Transcription elongation factor spt6 295 482 - -
Lapu1g00301 1656 FunFam Transcription elongation factor spt6 1118 1206 - -
Lapu1g00301 1656 SUPERFAMILY Tex N-terminal region-like 337 716 - -
Lapu1g00301 1656 MobiDBLite consensus disorder prediction 1494 1510 - -
Lapu1g00301 1656 SUPERFAMILY SH2 domain 1250 1336 IPR036860 -
Lapu1g00301 1656 Gene3D SH2 domain 1345 1441 IPR036860 -
Lapu1g00301 1656 FunFam Transcription elongation factor spt6 902 1000 - -
Lapu1g00301 1656 Gene3D - 1118 1205 IPR012340 -
Lapu1g00301 1656 SMART rnase_8s 737 855 IPR006641 GO:0006139
Lapu1g00301 1656 MobiDBLite consensus disorder prediction 1 90 - -
Lapu1g00301 1656 FunFam Transcription elongation factor spt6 1233 1344 - -
Lapu1g00301 1656 Pfam Helix-hairpin-helix motif 896 997 IPR032706 -
Lapu1g00301 1656 MobiDBLite consensus disorder prediction 1479 1493 - -
Lapu1g00301 1656 MobiDBLite consensus disorder prediction 113 226 - -
Lapu1g00301 1656 FunFam Transcription elongation factor spt6 1345 1438 - -
Lapu1g00301 1656 Gene3D - 295 493 IPR023319 -
Lapu1g00301 1656 FunFam Transcription elongation factor spt6 485 749 - -
Lapu1g00301 1656 Gene3D - 494 930 IPR023323 -
Lapu1g00301 1656 MobiDBLite consensus disorder prediction 163 199 - -
Lapu1g00301 1656 MobiDBLite consensus disorder prediction 1454 1656 - -
Lapu1g00301 1656 Pfam HHH domain 1012 1099 IPR041692 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00301 Lapu-Chr1 11875819 11885631 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00301 K11292 - gmx:100808591 2843.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00301 1 11875819 11885631 Lapu1g00301 1 11875819 11885631 ECH