Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00291 ATGACGGAGGTGTCGATGCGTGGCAGCAGCGTCTCTGAGCTGAGTCCAGACGAGGAGAGGATCATGATCAAAGACATTGCTCTCGCTGCCCAAGCTAACAGCAAAGAAGGAGACACCTTCTTCTTAATCACTCAGAGATGGTGGCAATATTGGATTGAGTATGTGAACCAAGACCAGTCAAACACTTCATACGATGGATCTTCCTTATCAGAACATGATTTGGTCAATTCAAGTGCTTTAAAGAGGCCAGCTGGTATTGATAATTCTGATTTGATAGATGATGCTGTGTCAGAGGACTCTGGTATGGGTATTGAGATTAATGATACTCTTCTAGAAGGCCGTGACTATGTATTACTTCCCCAAGAAGTTTGGGATCAATTATTTAGATGGTATGGAGGTGGACCTACATTGGCAAGGAAAGTTATTAGTTCAGGTCTTTCCCAGACTGAATTGGCAGTAGAGGTGTATCCTTTGCGGCTTCAATTACTTATGTTGCCAAAAAATGACCGTTTTGCTATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCATAGAAAAGCTTGTGAAATATTTGATCTTCAGCCAGACCAAGTGTGTATTTGGGATTACTATTCCCGTCGGAAGCATGCTTTGATGAATGACATGGACAAAACTCTTGATGATGCTAATTTACAAATGGACCAAGATATTCTTGTTGAGGTCATCAACAATTCAAGCAACACAAGTTTTGCCCAAGAAAACGGTTCTGCACTGAGGGAAGCAAATTTTGCCCTTGTGGAGCCTCCAAAGTCAAGCTTATCAATTGCTGGTGGCTTATCTGCTAGCAAAGGTGCATCTAGAGGCTACAACACAGACCTTTCTTCATCTCTAAGCCTGAATTCTCCAGTTAGAGACATGGAAAACCATTATGGAAGTAGTGGTGTCACCACAAGAGGTTCATTTGGTGGTCTAACTGGGTTGCTGAATCTTGGCAACACTTGTTACATGAATAGTGCGATACAATGCCTTGTTCATACACCAGAATTCGCTAGATACTTCAGGGAAGACTATCATCGAGAGATAAATTGGCAAAATCCATTGGGCATGGTTGGTGAACTAGCACTGGCATTTGGTGAGTTGCTTCGAAAGCTATGGGCTCCTGGACGAACACCAATTGCTCCTCGGCCATTTAAAACAAAGCTTGTTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAACATGATTCGCAGGAGCTTTTAGCATTTCTTCTGGATGGTCTTCATGAAGACTTGAATCGAGTAAAGCAAAAACCATATATAAAGTCTCGAGATGCTGATGGCAGACCTGATGAAGAAGTGGCTGATGAATATTGGGCAAATCATATTTCTCGGAATGATTCCATAATTGTTGATGTATGCCAGGGACAATACAAGTCAACTTTGGTTTGTCCAGTCTGCAATAAAGTCTCTGTCACATTTGATCCTTTTATGTACCTTTCCCTGCCACTCCAATCCTCCACCGCCAGTAGGACCATGACAGTGACAGTCTTTGCTTGTGATGGGGCTACCCTTCCATCTTCTTGTACAGTAACTGTCCCTAAGCAGGGACGAGTCAAAGATCTGGTCCAGGCACTTAGCAATGCTTGCTCATTGAAGCACAATGAGAGGTTATTGCTTGTGGAGATACGAAACCATTTGATCCATAGATATTTGGAAGATCCTCTTCATTTGTTGTCTACTGTTAAAGATGATGAGCGTCTAGCTGCTTACAAGATTCCAAAGATAGACAAGAACACGAAGTATCTCCAGTTGATACATCGTCGAAGAGAGCAGAGCAGTGACTCACAAGTCATATCAGGATGGAAACCATACGGAACACCTATTGTTTCATTGATTTCGTGTGATGATACAGTCACAAGAGGTGATATACAAGTAATAGTTAATCGTATTCTTTCCCCTCTGCTAAGGAGAGGTGGTAATGTAGAACAAGATACTACTTCTGAAGCAACCATCCCAAAAGCAGCACCTGACGAAGGCAGTCTTACTTATGATGACACATGTGCTGGCAACATGGTGTCAAATTCATTAAATAAGGATTTTACCAATTCAAAGACACCATCAATGCCAACGTTACCCCTTCTCTTGGTAGATGATAACAATGCTTGCATTGATCTTTCAATGGGCGAGGAGAAAGTGGTTAAACTGTCTCCGTCATCTCCAAAAGTTTTAGTGTATATTGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACTCATGCAATTGAGACTTTGCCTGAAGTTTTAAAATATGGGCCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCTTGTACACCTGCTTGGAGGCTTTTCTGCGTGAAGAACCTCTGGTGCCTGAAGACATGTGGTACTGTCCTAAATGCAAAGAGAGACGACAAGCAAGCAAGAAGCTTGATTTGTGGAGGCTCCCAGAGGTTTTGGTCATTCATTTGAAGAGGTTTTCATACAGCAGGTCAATGAAGCATAAACTGGAGACTTTTGTTAACTTTCCCATTCATGATTTTGATTTAACTAATTACATTGCCAACAAAAACAACTCTCGTCGGCAATTGTACGAATTGTATGCCCTTACAAATCATTATGGTAGTATGGGTAGCGGGCATTACACTGCACATATTAAGCTTTTAGATGAGAATAGGTGGTACAATTTTGATGACAGCCACATATCACTGATAAGTGAGGATGAGGTTAACACTGCTGCTGCCTATGTTCTATTTTACCGGAGGGTGAAGACCGACGAGGCAGCCATTAGCAATGGAGCTTAG 2808 0.4213 MTEVSMRGSSVSELSPDEERIMIKDIALAAQANSKEGDTFFLITQRWWQYWIEYVNQDQSNTSYDGSSLSEHDLVNSSALKRPAGIDNSDLIDDAVSEDSGMGIEINDTLLEGRDYVLLPQEVWDQLFRWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLMLPKNDRFAIRISKKETIGQLHRKACEIFDLQPDQVCIWDYYSRRKHALMNDMDKTLDDANLQMDQDILVEVINNSSNTSFAQENGSALREANFALVEPPKSSLSIAGGLSASKGASRGYNTDLSSSLSLNSPVRDMENHYGSSGVTTRGSFGGLTGLLNLGNTCYMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKTKLVRFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKQKPYIKSRDADGRPDEEVADEYWANHISRNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSSTASRTMTVTVFACDGATLPSSCTVTVPKQGRVKDLVQALSNACSLKHNERLLLVEIRNHLIHRYLEDPLHLLSTVKDDERLAAYKIPKIDKNTKYLQLIHRRREQSSDSQVISGWKPYGTPIVSLISCDDTVTRGDIQVIVNRILSPLLRRGGNVEQDTTSEATIPKAAPDEGSLTYDDTCAGNMVSNSLNKDFTNSKTPSMPTLPLLLVDDNNACIDLSMGEEKVVKLSPSSPKVLVYIDWSQKLLEKYDTHAIETLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISLISEDEVNTAAAYVLFYRRVKTDEAAISNGA* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00291 935 ProSiteProfiles DUSP domain profile. 14 142 IPR006615 GO:0004843
Lapu1g00291 935 SUPERFAMILY DUSP-like 15 142 IPR035927 -
Lapu1g00291 935 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 320 335 IPR018200 GO:0004843|GO:0006511
Lapu1g00291 935 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 866 883 IPR018200 GO:0004843|GO:0006511
Lapu1g00291 935 Gene3D - 5 155 IPR035927 -
Lapu1g00291 935 Pfam DUSP domain 37 142 IPR006615 GO:0004843
Lapu1g00291 935 Pfam Ubiquitin carboxyl-terminal hydrolase 319 921 IPR001394 GO:0004843|GO:0016579
Lapu1g00291 935 SMART dusp 33 145 IPR006615 GO:0004843
Lapu1g00291 935 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 319 924 IPR028889 -
Lapu1g00291 935 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 250 923 - -
Lapu1g00291 935 Gene3D Cysteine proteinases 309 549 - -
Lapu1g00291 935 Gene3D - 156 242 - -
Lapu1g00291 935 Gene3D Cysteine proteinases 739 932 - -
Lapu1g00291 935 SUPERFAMILY Cysteine proteinases 317 924 IPR038765 -
Lapu1g00291 935 CDD Peptidase_C19R 769 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00291 Lapu-Chr1 11507193 11525819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00291 777 926 Miscellaneous Gene Families AT4G31670 33.987 7.54e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00291 - - gmx:100794067 1699.1