Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00286 ATGGATTCGTCTTGTCTCTCCAACGATTCGGTTTCTGGATTCAAAGACAAGGAGTCAATGGTTGACCCCTTTTTAGTTGAGGCTCTCCAGAACCCTCGTCACCGTCTCACCATTTTGCGGATGGAGCTGGACATTCAGAGGTTTATGAATAATGCTGATCAACAGCATTTTGAGTTTCCACATTTCCCTTCTTCCTATCTCAGACTGGCTGCACATCGTGTTGCTCAACACTACAGCATGCAAACAATGGTTCAAGATAATGGCTTAGATGGTCAGGGAAGTAAAATTCTGGTGATAAAGTTACCAGAAAGCAAGTATCCTGTGGTTCGGTTATCTGAAATACCTGCAAAGCAATTGGAAAATGATAAACCTGAGCAGAAAAAATTTGTTATTAGACCTAGGCCTAATAAAAACAGTTTGAATGACGCTAATGGAGTTGGGATGAAAGGAAATCCTGTGAGAAGTGTGGAAGAGAGGAAGGAAGAATATGACCGAGCACGAGCACGAATCTTTAGTAGCTCTAGAATCTCTGACCCAGGTGATACCTCATCCCTGGTTCCAATGGATGGTAGAAATTCTTCTACTAGCAAGGATGAGAGTGAAACTAGCAAGAACCCCGTGGCTGATTCAGAAAGATGTATCAGTGTCAGAGATGGTTGTTCGAATCGAGTTGCCATATTCAGGGATAGGGAAAAGGATCGTAGTGATCCAGATTATGACCGTAGTTATGGAAGGTATGCTAGGAGTATTCCAACCTCTGCTGTTAACTTGGTGCCATTTAACTTGCAAAAAGCTCAACCTTCATTTGCTCAATATGACGCTACATTTAATCAGTTGGGTCAGATGTCACAAACTCAGGCTACACATGGCTATGTACCTCCTTCTACCCCGATAATGAATCCTTTTTGCACCACAGGATTGAATCAGACACCTACAGACGGTGCTTACCTACAGTGGCCTAGTGCTGCTATGATGTATGCACATTCTTATGACCAATTTAGACATGCTGTTTTCCAGGCTCCATTTGGTCAACAGCCGTTGAGCTTTGACTATTCGCAGAACTATTAG 1068 0.4288 MDSSCLSNDSVSGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQRFMNNADQQHFEFPHFPSSYLRLAAHRVAQHYSMQTMVQDNGLDGQGSKILVIKLPESKYPVVRLSEIPAKQLENDKPEQKKFVIRPRPNKNSLNDANGVGMKGNPVRSVEERKEEYDRARARIFSSSRISDPGDTSSLVPMDGRNSSTSKDESETSKNPVADSERCISVRDGCSNRVAIFRDREKDRSDPDYDRSYGRYARSIPTSAVNLVPFNLQKAQPSFAQYDATFNQLGQMSQTQATHGYVPPSTPIMNPFCTTGLNQTPTDGAYLQWPSAAMMYAHSYDQFRHAVFQAPFGQQPLSFDYSQNY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00286 355 Pfam R3H domain 37 88 IPR001374 GO:0003676
Lapu1g00286 355 MobiDBLite consensus disorder prediction 153 171 - -
Lapu1g00286 355 Pfam SUZ domain 125 174 IPR024771 -
Lapu1g00286 355 MobiDBLite consensus disorder prediction 175 193 - -
Lapu1g00286 355 CDD R3H_encore_like 34 88 - -
Lapu1g00286 355 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 17 342 - -
Lapu1g00286 355 SUPERFAMILY R3H domain 8 136 IPR036867 GO:0003676
Lapu1g00286 355 MobiDBLite consensus disorder prediction 131 210 - -
Lapu1g00286 355 Gene3D - 11 135 IPR036867 GO:0003676
Lapu1g00286 355 ProSiteProfiles SUZ domain profile. 105 175 IPR024771 -
Lapu1g00286 355 ProSiteProfiles R3H domain profile. 35 103 IPR001374 GO:0003676
Lapu1g00286 355 SMART R3H_4 19 101 IPR001374 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00286 Lapu-Chr1 11317633 11321281 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00286 - - gmx:100796710 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00286 1 11317633 11321281 Lapu1g00286 1 11317633 11321281 ECH