Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00272 ATGATAACCTTGTTGGACCTGTACCATGTTCTCACAGCGGTCGTGCCGCTCTACGTGGCCATGATCCTCGCCTACGGTTCCGTCAAGTGGTGGAAGATCTTCACGCCTGACCAATGCTCCGGCATCAACCGCTTCGTCGCACTCTTCGCGGTGCCTCTACTATCCTTCCACTTCATCTCCACCAACAACCCCTACGCCATGAACTACAAGTTCATAGCTGCGGATTCGCTTCAGAAAGCCATAGTCCTCGCTGTGCTCTTTGTCTGGTCTAGAACCAGCTCACGGGGCTCTCTCGAATGGTCCATCACTCTCTTCTCCCTCTCTACTCTCCCCAACACGCTCGTCATGGGGATCCCATTGCTCAAGGGCATGTACGGGGACGCGTCGGGGACCCTCATGGTGCAGATAGTGGTGCTTCAGTGCATCATCTGGTACACTTTGATGCTGTTTTTGTTTGAGTATAGGGGTGCCAAGCTTCTCATCGTGGAGCAGTTTCCCGACACTGCAGGGTCCATTATCTCGTTCAAGGTTGACTCAGATATCATATCGTTGGATGGGAAGGAACCGCTTCAGACTGAAGCCGAGGTTGGTGACGATGGCAAGCTTCATGTTACTGTCAGAAAGTCCACTAGTTCGCGCTCTGAGATCTTCTCGCGGCGCTCGCATGGTCCTAACTCGGTTTCCTTGACTCCGAGGCCTTCCAATTTAACCAATGCAGAGATTTACTCGCTGCAGTCTTCGAGGAATCCAACCCCTAGAGGGTCCAGTTTCAACCACACGGACTTCTACTCGATGGTGAATAATGGGAGGAACGTGAGTCCGAGGCAGAGTAGTTTTGGGGGTGTGGCGTTTGATGAGGAGAGTGGTGTGAGGGTTAATGGGGGTGCAGGAGGGTACCCTGCACCTCACAATGCGGGGATTTTTTCTCCGGTGGGGAAGAAGAAGGGTGCTGGTGGTGGTGAAGGTGGAGGAAAGGATCTTCACATGTTTGTGTGGAGTTCAAGTGCTTCTCCGGTGTCGGAAGGTGGGATCCATGTGTTCAGAGGTGGGGATTATGGAAATGACCAACTTTCTGTTGGTGGGGTGGCTCACCAGAAAGATTATGATGATTTTGGTCACGACGAGTTTAGCTTCGGGAACAGAACCGTCGCTAATGGGGTCGACAAGGAAGGGCCAGTACTTTCCAAGCTTGGTTCGAGTTCGACGGCTGAGCTTCATCCTAAAGCACAAGGTGAATCCAAAGCAACTACCATGCCACCCACAAGTGTTATGACAAGACTCATTCTGATAATGGTTTGGAGAAAGCTGATTAGGAACCCCAACACGTATTCCAGCCTCTTTGGTCTCACTTGGTCTTTGATCTCATTCAAGTGGAATGTTGTTATGCCTGCGATTGTTGCTCGATCCATATCAATTTTATCTGATGCTGGCCTTGGGATGGCAATGTTTAGCCTCGGGTTATTCATGGCATTGCAGCCGAAGATTATTGCATGTGGGAACTCGGTTGCTTCTTTTGCTATGGCAGTTCGTTTCCTCACTGGACCTGCTGTCATGGCTGTTGCTTCAATAGTTGTAGGGCTCAGAGGAGTTCTGTTGCACATTGCCATTGTACAGGCTGCTCTGCCTCAAGGGATTGTCCCCTTTGTGTTTGCCAAGGAATACAACGTTCATCCCGACATCCTTAGCACTGGGGTTATATTTGGGATGCTAATTGCTCTTCCTATTACGCTAGTTTACTACATTTTGCTTGGGCTTTGA 1758 0.504 MITLLDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYAMNYKFIAADSLQKAIVLAVLFVWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDASGTLMVQIVVLQCIIWYTLMLFLFEYRGAKLLIVEQFPDTAGSIISFKVDSDIISLDGKEPLQTEAEVGDDGKLHVTVRKSTSSRSEIFSRRSHGPNSVSLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMVNNGRNVSPRQSSFGGVAFDEESGVRVNGGAGGYPAPHNAGIFSPVGKKKGAGGGEGGGKDLHMFVWSSSASPVSEGGIHVFRGGDYGNDQLSVGGVAHQKDYDDFGHDEFSFGNRTVANGVDKEGPVLSKLGSSSTAELHPKAQGESKATTMPPTSVMTRLILIMVWRKLIRNPNTYSSLFGLTWSLISFKWNVVMPAIVARSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVASFAMAVRFLTGPAVMAVASIVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00272 585 MobiDBLite consensus disorder prediction 213 232 - -
Lapu1g00272 585 MobiDBLite consensus disorder prediction 398 417 - -
Lapu1g00272 585 Pfam Membrane transport protein 9 580 IPR004776 GO:0016020|GO:0055085
Lapu1g00272 585 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 585 - -
Lapu1g00272 585 NCBIfam auxin efflux carrier 1 585 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00272 Lapu-Chr1 10796742 10799745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00272 1 576 Organic Solute Cotransporters AT1G73590 66.246 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00272 K13947 - gmx:100820506 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00272 1 10796742 10799745 Lapu1g00272 1 10796742 10799745 ECH