Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00258 ATGTGGGCTCTTCGTCGAGCTTCTATCCCTCTCAGGACCCGATGGTATAACGCGAGAATTTCTTGTGTCAAAGTGGCGCAAACTAATTGTGTGGAAGAAGAGAGTGGTACCACTGAGTCTCGTGGAATAACATATGGTGGATTGTTGTTGAGGGGTACGCGTTTTCATTCTGGGCAAAGTGCATCCCCGCATTTTACTGTGTGGAGACGCGAACTTTCATCTAGTAGCACCAAAGAGGATGATGATTTGGAGGATGGATTTTCCGAGCTGGAGACACCTGCTGGCGATGAAAATGAAATTGAAAATCTTTTAGCTTCTGATGCCGACCAATGGGATGACGATGGTGACAAGGAGAATGTTGAGGAGCCTAGCAACCAGGTTGATGAGGTGGTCAAGGGGAAAGGAGAACCGCGTGGAAGGGTTGAATCCGAACTATTCAATGAGATCATGAATGCACCGGGTCTGTCTATTCATGTGGCTCTGGAGAAGTGGTTAGCAGAAGGGAATGAACTAACCAGAGAGGAGGTGTCACATGCCATGGTTTATCTTCGAAAGCGAAAGATGTATGGGAGAGCTTTGCAGCTCTCAGAGTGGCTCGAGTCAAAAAATCAGTTTGAATTTCTTGAAAAAGATTATGCAAGTCGACTTGATTTAATTGCTAGAGCACGTGGCTTACATAAGGCAGAGGTTTACATTGAAACTATTCCAGAATCTAGCAGAGAGATAATGTACCGGACTTTATTGTCTAACTGTGTAATTCAGAACAATGTGAAGAAAGCAGAGGAAGTTTTCAATAAATTGAAGAATTTGGACTTCCCTGTTACAGTATATGCTTGCAATCAGATGTTACTTCTGTATAAGAGGAATAACGAGAAGAAAATAGCTGATGTGTTATTGTTGATGGAAAATGAGAATATCAAGCCTTCTTCTCTTACTTATTCAATCTTAATAGACACAAAAGGCCTCTCCAAAGATATTGATGGAATGGATCAAATTGTTGATAGAATGAAAGCTCAAGGCATTGAACCAGACATAAAAACACGGGCTGTTTTGACTAAGCATTACATCTCAGCTGGGCTTCGAGATAAAGCTGAAACCTTACTGAAGGAGATGGAAGGTGAAAACTTGAAACAGGAGCGGTGGCTATGCCAAATTTTACTTCCCCTCTATGCAAGCCTAGGAAAGGTGGATGAAGTGAGAAGAATTTGGAAGGTCTGTGAGACAAACCCTTGGCGTGGCGAGTGTCTGGTGGCAATTGAAGCTTGGGGAATGTTGAATAATGTTGATGAAGCAGAGAATGTTTTTGAGACAATGATAAAGAAATGGAGGCTTTCTTCCAAGACTGGCTCTGCACTACTGAAGGTTTATGCAAATCATAAGATGCTATTGAAGGGTAAGAATCTTATTAAGCGAATGGGAAATAGTGGGTGCCGAGTAGGCCCACTGACCTGGGATGCATTAGTGAAACTCTATGTCCAAGCCGGGGAAGTGGAGAAGGCAGACTCTGTTCTTCATAAGGCAGCCCTTCAGAGCCAGATGAAGCCAATGTTTTGCACCTACCTAATTATTTTGCAGCAGTATGCTAAGAGGGGTGACATTCATAACACAGAGAAGATTTTCTATAGAATGAAACAATCTAATTATGCATATACCCCAAAGATGTACCAAGTTCTAGTGAATGCCTATATAAATGCAAAGGCTCCAGCCTATGGGATTAGGGACAGATTAAGAGCTGATAACATATCGCCCAGTAAAACTTTGGGAAACCTGTTGATTCAAGTTGATGGATTCAGAAAGAATTCAGTCTCCGAATTGCTTGATTGA 1824 0.4221 MWALRRASIPLRTRWYNARISCVKVAQTNCVEEESGTTESRGITYGGLLLRGTRFHSGQSASPHFTVWRRELSSSSTKEDDDLEDGFSELETPAGDENEIENLLASDADQWDDDGDKENVEEPSNQVDEVVKGKGEPRGRVESELFNEIMNAPGLSIHVALEKWLAEGNELTREEVSHAMVYLRKRKMYGRALQLSEWLESKNQFEFLEKDYASRLDLIARARGLHKAEVYIETIPESSREIMYRTLLSNCVIQNNVKKAEEVFNKLKNLDFPVTVYACNQMLLLYKRNNEKKIADVLLLMENENIKPSSLTYSILIDTKGLSKDIDGMDQIVDRMKAQGIEPDIKTRAVLTKHYISAGLRDKAETLLKEMEGENLKQERWLCQILLPLYASLGKVDEVRRIWKVCETNPWRGECLVAIEAWGMLNNVDEAENVFETMIKKWRLSSKTGSALLKVYANHKMLLKGKNLIKRMGNSGCRVGPLTWDALVKLYVQAGEVEKADSVLHKAALQSQMKPMFCTYLIILQQYAKRGDIHNTEKIFYRMKQSNYAYTPKMYQVLVNAYINAKAPAYGIRDRLRADNISPSKTLGNLLIQVDGFRKNSVSELLD* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00258 607 Gene3D Tetratricopeptide repeat domain 239 420 IPR011990 GO:0005515
Lapu1g00258 607 Gene3D Tetratricopeptide repeat domain 421 606 IPR011990 GO:0005515
Lapu1g00258 607 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 240 415 - -
Lapu1g00258 607 Pfam PPR repeat 519 547 IPR002885 -
Lapu1g00258 607 Pfam PPR repeat 483 506 IPR002885 -
Lapu1g00258 607 NCBIfam pentatricopeptide repeat 312 345 IPR002885 -
Lapu1g00258 607 NCBIfam pentatricopeptide repeat 243 274 IPR002885 -
Lapu1g00258 607 MobiDBLite consensus disorder prediction 82 98 - -
Lapu1g00258 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Lapu1g00258 607 MobiDBLite consensus disorder prediction 72 98 - -
Lapu1g00258 607 PANTHER OS12G0527900 PROTEIN 73 584 - -
Lapu1g00258 607 Pfam Pentacotripeptide-repeat region of PRORP 241 402 IPR033443 -
Lapu1g00258 607 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 416 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00258 Lapu-Chr1 10339703 10350386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00258 149 546 EF-hand Containing Proteins AT1G02150 24.146 2.78e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00258 - - gmx:100500196 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00258 1 10339703 10350386 Lapu1g00258 1 10339703 10350386 ECH