Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00207 ATGCTAGTTTCGAGATTTTCTGTTTCAAATGTTTATGAAGTGGCGAGTGCCACCACGCGCCTCCGGTGTCTCATCAAAATGTCTCTTTTGCCTCGTCTCCGTGTCTTCGCCACGCCTTTACTCTCATCTCCTCTCCTCCGCCCCTTCTCCCAGAATGGAGGTGGAGAAATTATGGCAAGTACTGGCATCAATGCCTGCTCGCTTTCTTCCACAGCTGAAGCTTCAGATTTAGAATGTGATGTGACTCGTGATGATGTCAAAGCAGCAGAGAGAGCCAATGCACTTTGCATGGCTGTATCACAGCTTGCTAGTGAGTTTAGCAAGGAATCTATGTTGTCTTTGCAGAAGTTTTTTGGTGTGCGCCGTGCTCATGTGATATCTACAGGCTCCTTGAAGCTTGACCTAGCTCTGGGAATAGGAGGATTGCCAAAGGGTAGGATTGTGGAACTTTATGGACGAGAAGCAGCTGGTAAGACTACACTTGCTCTTCAAATTATTAAAGAGGCTCAAAAACTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCTCTGGACTTCTCACTTGTGGAATCGATAGGTGTAAATACTGAAAACCTTCTCGTATCACATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACGTTAACAAAAAGTGGAGCTGTAGATGTGATTGTGATTGATAGTGTTGCTGCCCTCATCCCCAAATCTGAACTTGATCAAGTAGGAGTTAGCATCATACGAGATTTACAATCACGAATGATGACTCAAGCACTGCGGAAAATTCACTATTCATTATCTCACTCTCGAACTCTCATTATTTTCATTAATCAGATTAGATTGAGTTCAAAATCAGTTAAGGAATATGGATCTGTGGAAGAAGTTACTTGTGGTGGAAATGCCTTGAGATTCTATGCAGCCATTCGTTTGAGGCTTTCAAGAATGAGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTCTGATCTGTGCGCAAGTGGTGAAAAATAAACTAGCACCAGCAGCAACGAAAAGGGCCGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGATGTCTTAGATTTGGCCTGTGAACATGGAATCATTGTGAAAGATGAGGGAAGCTACATTATTGAAGGGAGAAGTTTTGATACTAGAGAAGCAGCTGAACTGTTTTTGGCTCAAAATGAAGGCATCTGTGACAAGTTGGTTAAGGATATGAGAAGACTTTATTTTTAA 1254 0.4211 MLVSRFSVSNVYEVASATTRLRCLIKMSLLPRLRVFATPLLSSPLLRPFSQNGGGEIMASTGINACSLSSTAEASDLECDVTRDDVKAAERANALCMAVSQLASEFSKESMLSLQKFFGVRRAHVISTGSLKLDLALGIGGLPKGRIVELYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDFSLVESIGVNTENLLVSHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALIPKSELDQVGVSIIRDLQSRMMTQALRKIHYSLSHSRTLIIFINQIRLSSKSVKEYGSVEEVTCGGNALRFYAAIRLRLSRMRLIKTEDKVEGVLICAQVVKNKLAPAATKRAELGIKFGRGFCHESDVLDLACEHGIIVKDEGSYIIEGRSFDTREAAELFLAQNEGICDKLVKDMRRLYF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00207 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 346 IPR027417 -
Lapu1g00207 417 ProSiteProfiles RecA family profile 1. 122 281 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lapu1g00207 417 CDD RecA 125 360 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu1g00207 417 ProSitePatterns recA signature. 303 311 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lapu1g00207 417 ProSiteProfiles RecA family profile 2. 291 363 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lapu1g00207 417 PANTHER RECA 69 415 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu1g00207 417 PRINTS RecA protein signature 252 281 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu1g00207 417 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu1g00207 417 PRINTS RecA protein signature 214 243 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu1g00207 417 PRINTS RecA protein signature 334 363 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu1g00207 417 PRINTS RecA protein signature 300 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu1g00207 417 Pfam recA bacterial DNA recombination protein 94 358 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu1g00207 417 Gene3D - 121 414 IPR027417 -
Lapu1g00207 417 SMART AAA_5 144 324 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00207 Lapu-Chr1 8548019 8553745 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00207 - - gmx:100777423 647.506