Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00193 ATGTCAGACACCTTCTGCAGCGACTGCAAGAGGCAGACTGAGGTGGTGTTCGACCACTCGGCAGGGGACACCGTGTGCTCCGAGTGCGGTCTCGTCTTGGAGTCCCACTCCATCGACGAAACCTCCGAGTGGAGAACCTTCGCCAACGAGTCCGGCGACAACGACCCCGTGCGTGTCGGCGGGCCTACCAACCCGCTTCTCACCGACGGCGGCCTCTCCACAGTCATCGCCAAGCCGAACGGCGCCTCCAGCGAGTTCCTCTCCTCCTCACTCGGCCGCTGGCAGAACCGCGGCTCCAACCCCGACCGCGGACTCATCGTCGCCTTCAAAAGCATCGCCACCATGTCCGATAGCAACTTGTTTGGATTTCTTGTCGTGGTGGTGCAACACACCATTCTGCAATGGCGGCCATGCGGCCACCAGTTAACAACGTTCTTGGTGGTCTCATACCCATTAGAGAAGTAG 465 0.6043 MSDTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLSTVIAKPNGASSEFLSSSLGRWQNRGSNPDRGLIVAFKSIATMSDSNLFGFLVVVVQHTILQWRPCGHQLTTFLVVSYPLEK* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00193 154 Gene3D - 5 128 - -
Lapu1g00193 154 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Lapu1g00193 154 Pfam TFIIB zinc-binding 5 47 IPR013137 -
Lapu1g00193 154 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Lapu1g00193 154 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Lapu1g00193 154 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Lapu1g00193 154 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Lapu1g00193 154 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 4 117 IPR000812 GO:0006352|GO:0070897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00193 Lapu-Chr1 8140297 8141043 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00193 K03124 - mnt:21410718 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00193 1 8140297 8141043 Lapu1g00193 1 8140297 8141043 ECH
Lapu1g00193 1 8140297 8141043 Lapu7g00305 7 3707150 3711994 PCT