Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu1g00178 | ATGGCCAGCACCGCAACTCACTGTCTCCAACTCGCCGGCGCCACCGCCGCGTCGACTCACGGCAGAACCTCCATATCATGCAAGAAAAAGTCGGATAAGACAGCATTCAAGGAAACGAAAGAAGGCTTCGTGGACTATGACCGAGGCCTGCACGAGGTCTCCACCAAAATCTCCGGTCTCCGCAAGGACAACATCGCCACTCACTACCGCCTCCACGTGGCTGGAAACCGCTTCCAGATGGACTGGACGGTGTCCGAGGTCGCCGACCTCGTCCTCTCCCTCAACCTCTCCGACGACATCGACGGCCTACTCAACCGTTGGATAGGCCGCTTCGCGCGCAAGAATTTCCCCTACCTCATTAAGGAGTTGACACAGCGAGGGTCCATTGAACATTGTAACCGCGTGTTCCGGTGGATGAAGTACCAGAGGAACTACCGTGCGCGCAATGATATATACAATATGATGATTAGGTTGCACGCTCGCCACAATCGAACGGACCATGCGCGTGGATTGTTTTTCGAGATGCAGGAGTGGAGGTGTAAACCAGATGTTGAGACTTATAATGCTCTTATCAACGCTCATGGTCGAGCTGGACAGTGGCGTTGGGCTTTGAATATCATGGATGACATGCTGCGTGCAGCTATTCCACCGAGTAGGTACACTTATAACAACTTGATAAATGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTTAACGTTTGCAAGAAAATGACAGACAATGGTGTTGGGCCTGATCTTGTTACTCACAATATTATTCTATCTGCATTTAAAAGTGGGGCTCAGTATTTGAAAGCTCTGTCATATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGACACAACTACACTTAATATTGTTATCCATTGTCTAGTAAAGCTTCAACAATATGACAAAGCTATTGATACTTTTAATTCCATGAGGGAGAAGAAATCAGAATGTACCCCTGATGTTGTTACATTCACAAGTATCATTCACTTGTATTCTGTGTGTGGGCAAGTTGAAAATTGTGAGGCTGTATTCAATATGATGCTTGCAGAAGGGCTGAAACCTAATATAGTCTCATATAATGCACTAATAGGTGCATATGCTGCTTGTGGGATGGACAATGAGGCACTTATGGTTTTCAATGAGATAAAAGGAAATGGTTTCCGGCCTGATGTTGTATCTTATACATCCCTCCTTAATGCTTATGGAAGGTCACAAAAACCCCAAAAAGCAAGGAAAATATTTGATATGATAAAGAGAAACAAGTTGAAGCCAAACCTTGTCAGTTACAATTCACTGATTGATGCCTACGGATCTAATGGCTTGCTGACAGATGCAATTGAAGTCTTGCGAGAAATGGAACAAGATGGAATTCAACCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCAGAAGGTGAAGATTGACACAGTGCTAACAGCAGCTAAGATGCGAGGAATTAAGTTAAATACAGTTGCATATAATTCAGCTATAGGAAGCTGTATGAATATAGGGGAATATGACAAAGCTATAAACTTGTATAAATCTATGAGGAAGAAAAAAATTAAAACCGATTCTGTTACTTACACTGTGTTAATAAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTTTTTCCAAAGAGGTCTACTCTTCTGTCATATGTGCCTATAGCAAACAGGGTCAAATTGAAGAAGCAGAATCTACATTTAACTTGATGAAATCATCTGGATGTTACCCTGATGTGGTAACATACACTTCCATGATTGATGTTTACAATGCAGCTGGGAATTGGGAGAAAGCCTATGCACTCTTTGAAGAAATGGAAGCAAGTGACATCAAGCTAGATACCATTGCCTGTGCAGCTCTAATGAGATCTTTTAATAAAGGTGGTCAACCGGGAAGGGTTCTTAGTCTTGCACAAAGCATGAGAGAAAAAGAAATTCCTTTCAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGATATAATCAAGTACATAGAGCCTTCACTTCCTGTAATTTCATCCGGATGTTTGAATCAGTTCCTGCATTCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGGCATCAGGTATTGATGTTAACTTAAGCACTTACTCTATCTTATTGAAGAACCTTTTATCATCTGGAAATTGGAGAAAGTATTTAGAGGTACTGCAATGGATGGAGGATGCAGGCATTCGTCCATCAAATGAAATGTACCATGATATATCTTCCTTTTCACAAAAATGCTGTGGGCACGAAAATGCTGCTGTTATAAAAGAAAGACTTGAATCCTTGAAAAGAAGATCCGGGGATCAAAGTTCTGCCAGCCAACCATGTGAAACTCCTGTTCTTAGTTGA | 2493 | 0.4164 | MASTATHCLQLAGATAASTHGRTSISCKKKSDKTAFKETKEGFVDYDRGLHEVSTKISGLRKDNIATHYRLHVAGNRFQMDWTVSEVADLVLSLNLSDDIDGLLNRWIGRFARKNFPYLIKELTQRGSIEHCNRVFRWMKYQRNYRARNDIYNMMIRLHARHNRTDHARGLFFEMQEWRCKPDVETYNALINAHGRAGQWRWALNIMDDMLRAAIPPSRYTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIILSAFKSGAQYLKALSYFELMKGTHIRPDTTTLNIVIHCLVKLQQYDKAIDTFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAVFNMMLAEGLKPNIVSYNALIGAYAACGMDNEALMVFNEIKGNGFRPDVVSYTSLLNAYGRSQKPQKARKIFDMIKRNKLKPNLVSYNSLIDAYGSNGLLTDAIEVLREMEQDGIQPNVVSICTLLAACGRCSQKVKIDTVLTAAKMRGIKLNTVAYNSAIGSCMNIGEYDKAINLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEMMHLKLPFSKEVYSSVICAYSKQGQIEEAESTFNLMKSSGCYPDVVTYTSMIDVYNAAGNWEKAYALFEEMEASDIKLDTIACAALMRSFNKGGQPGRVLSLAQSMREKEIPFSDTIFFEMVSACSILQDWRTAVDIIKYIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGIDVNLSTYSILLKNLLSSGNWRKYLEVLQWMEDAGIRPSNEMYHDISSFSQKCCGHENAAVIKERLESLKRRSGDQSSASQPCETPVLS* | 831 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 605 | 639 | IPR002885 | - | |
| Lapu1g00178 | 830 | SUPERFAMILY | TPR-like | 288 | 661 | IPR011990 | GO:0005515 | |
| Lapu1g00178 | 830 | FunFam | Pentatricopeptide repeat-containing protein isoform A | 460 | 566 | - | - | |
| Lapu1g00178 | 830 | FunFam | Pentatricopeptide repeat-containing protein At2g41720 | 86 | 246 | - | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 745 | 779 | IPR002885 | - | |
| Lapu1g00178 | 830 | PANTHER | OS07G0661900 PROTEIN | 714 | 794 | - | - | |
| Lapu1g00178 | 830 | MobiDBLite | consensus disorder prediction | 814 | 830 | - | - | |
| Lapu1g00178 | 830 | Pfam | Pentatricopeptide repeat domain | 323 | 371 | IPR002885 | - | |
| Lapu1g00178 | 830 | Pfam | Pentatricopeptide repeat domain | 447 | 477 | IPR002885 | - | |
| Lapu1g00178 | 830 | Pfam | Pentatricopeptide repeat domain | 383 | 444 | IPR002885 | - | |
| Lapu1g00178 | 830 | Pfam | Pentatricopeptide repeat domain | 733 | 781 | IPR002885 | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 570 | 604 | IPR002885 | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 253 | 287 | IPR002885 | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 535 | 569 | IPR002885 | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 148 | 182 | IPR002885 | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 183 | 217 | IPR002885 | - | |
| Lapu1g00178 | 830 | Gene3D | Tetratricopeptide repeat domain | 570 | 637 | IPR011990 | GO:0005515 | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 607 | 641 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 186 | 218 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 573 | 606 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 537 | 566 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 397 | 430 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 327 | 361 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 502 | 535 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 291 | 322 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 151 | 184 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 432 | 466 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 220 | 253 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 362 | 396 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 255 | 289 | IPR002885 | - | |
| Lapu1g00178 | 830 | NCBIfam | pentatricopeptide repeat | 715 | 745 | IPR002885 | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 218 | 252 | IPR002885 | - | |
| Lapu1g00178 | 830 | Pfam | PPR repeat | 151 | 180 | IPR002885 | - | |
| Lapu1g00178 | 830 | Pfam | PPR repeat | 291 | 318 | IPR002885 | - | |
| Lapu1g00178 | 830 | Gene3D | Tetratricopeptide repeat domain | 392 | 488 | IPR011990 | GO:0005515 | |
| Lapu1g00178 | 830 | FunFam | Os07g0213300 protein | 265 | 379 | - | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 500 | 534 | IPR002885 | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 325 | 359 | IPR002885 | - | |
| Lapu1g00178 | 830 | Gene3D | Tetratricopeptide repeat domain | 651 | 825 | IPR011990 | GO:0005515 | |
| Lapu1g00178 | 830 | Gene3D | Tetratricopeptide repeat domain | 271 | 391 | IPR011990 | GO:0005515 | |
| Lapu1g00178 | 830 | Gene3D | Tetratricopeptide repeat domain | 489 | 569 | IPR011990 | GO:0005515 | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 430 | 464 | IPR002885 | - | |
| Lapu1g00178 | 830 | Gene3D | Tetratricopeptide repeat domain | 113 | 270 | IPR011990 | GO:0005515 | |
| Lapu1g00178 | 830 | Pfam | PPR repeat family | 500 | 548 | IPR002885 | - | |
| Lapu1g00178 | 830 | Pfam | PPR repeat family | 182 | 229 | IPR002885 | - | |
| Lapu1g00178 | 830 | Pfam | PPR repeat family | 573 | 615 | IPR002885 | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 360 | 394 | IPR002885 | - | |
| Lapu1g00178 | 830 | MobiDBLite | consensus disorder prediction | 811 | 830 | - | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 395 | 429 | IPR002885 | - | |
| Lapu1g00178 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 288 | 322 | IPR002885 | - | |
| Lapu1g00178 | 830 | FunFam | Pentatricopeptide repeat-containing protein At2g41720 | 653 | 830 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu1g00178 | 139 | 788 | Glycosyltransferase | AT1G05670 | 23.263 | 3.21e-40 | 157 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu1g00178 | - | - | gmx:100814643 | 1528.84 |