Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00131 ATGATGAATTTTCGCTGCTATCACGCAGTGCGAGAGAAGAGTGAGAATCCTACAATGAAGGAACCACTCGTCTTCCTCTTATTCTTCCTTCTCACCCAATCTCTTTTCGCCACGTCATCACCTCTTAACCCTATCTCAATCTCGCTCTCCGTCGCCGACTTCGGCGCCGCCGGCGATGGCAGCTGCTACGATACTGCAGCGATCCAGTCGGCCATCAACTCCTGTCCGGACGGCGGTCCCTGCCACGTCATCTTCCCGGCGCCGGGAAAATACCTGACGGCCACCGTGTTCCTGAAATCCGGCGTGGTGCTGGTCGTGGAGCCTGGTGCCACCATCCTGGGTGGCGCCAGACTGGAGGACTACCCGAATGAGTCGTGGCGGTGGTACGTGGTGGTGGCGGAGAACGCGACGGACGTGGGAATCCGCGGCGGCGGAGTGGTGGACGGTCAGGCTACGAAATTCGTAGTGAGGGAAGACCCGAGGAAGAACGTGATGGTTAGCTGGAATCAAACTGGTGCTTGCTTAGGAGACGAATGCAGACCTAGACTCATTGGATTCATTGGTTGCAACAATGTTGAAGTTTCTAACATCACTCTCAACCAACCTGCTTATTGGTGCTTACACTTGGTGCGGAGTAATAACGTATCCATTAAAGATATTGCAATTAATGGGGACTTTAACATACCAAACAATGATGGGATTGACATTGAGGACTCGAACAACACCGTAATCACTCGATGCCACATCGATACTGGGGATGATGCAATCTGTCCAAAGTCATCCACAGGTCCTGTTTACAACCTTACGGTCACCGACTCTTGGATTCGATCCAAATCTTCTGCTATTAAACTTGGCAGTGCTAGTTGGTTTGATTTCAAACATTTTATGTTTGATAATATCAGTATTGTTGATTCTCATAGAGGGATTGGTTTCCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTATTCTCAAACATTAATATCAGCACAAGATATTATGACCCGTTATGGTGGGGGAGAGCAGAGCCTATCTATGTCACAAGTTGCCCACGAGACTCAACCTCAAAGGAGGCTACAATCTCTGATGTACTTTTCATTAACATTACTGCAAATTCTGAAAATGGCATCTTCCTGTCTGGTTCAAAGAGAGGATTGCTAAGAAATTTGAGATTCATCAACATGGACATTACATACAGAAGGTTCACCAATTATGCTGGTGGGTTATTGGACTATAGGCCAGGATGCCAAGAATTAGTTAAACACAGGACCGCGGGCATAATGATGGAGCACATTGAAGGGCTTGAGGTAAAAAATGTTGAAATGAGATGGTCAAGCAATCAACTAGAGCAGTGGAATAATCCTTTAGAGTTCAGACCATCTACTGTGAATAACATATCTTTCCTTAATTTTAGTTCTGGTTTGTATACAGATAGCTAA 1440 0.4653 MMNFRCYHAVREKSENPTMKEPLVFLLFFLLTQSLFATSSPLNPISISLSVADFGAAGDGSCYDTAAIQSAINSCPDGGPCHVIFPAPGKYLTATVFLKSGVVLVVEPGATILGGARLEDYPNESWRWYVVVAENATDVGIRGGGVVDGQATKFVVREDPRKNVMVSWNQTGACLGDECRPRLIGFIGCNNVEVSNITLNQPAYWCLHLVRSNNVSIKDIAINGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVYNLTVTDSWIRSKSSAIKLGSASWFDFKHFMFDNISIVDSHRGIGFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTSCPRDSTSKEATISDVLFINITANSENGIFLSGSKRGLLRNLRFINMDITYRRFTNYAGGLLDYRPGCQELVKHRTAGIMMEHIEGLEVKNVEMRWSSNQLEQWNNPLEFRPSTVNNISFLNFSSGLYTDS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00131 479 Gene3D - 36 407 IPR012334 -
Lapu1g00131 479 PANTHER PECTIN LYASE-RELATED 44 444 - -
Lapu1g00131 479 Pfam Glycosyl hydrolases family 28 128 399 IPR000743 GO:0004650|GO:0005975
Lapu1g00131 479 SMART pbh1 239 260 IPR006626 -
Lapu1g00131 479 SMART pbh1 212 238 IPR006626 -
Lapu1g00131 479 SMART pbh1 265 286 IPR006626 -
Lapu1g00131 479 SMART pbh1 356 381 IPR006626 -
Lapu1g00131 479 SMART pbh1 319 341 IPR006626 -
Lapu1g00131 479 SUPERFAMILY Pectin lyase-like 41 412 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00131 46 477 Glycoside Hydrolase AT3G57790 68.100 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00131 - - gmx:100794954 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00131 1 6364973 6368356 Lapu1g00131 1 6364973 6368356 ECH