Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00084 ATGAAGCGAGTGTGGAGATTCTCTTCAGACGCAGCAGCGCGAGTTCAATTGTTGCTCTTCCAATCACACTTCCATGGATTCTCCAAACCCAAAATCATTCCCTCCTTCTCCACCGCGCTATCTTATCGCAAGCTCAATACGGTGTCGAACCCTGTCTCTGACCTCATTCCACTGTTCACTTCCAAAGCTTGTTCTTCAACCAAAATGGATCTAGTCAACACCGTCATGATTCTTAGGAACAGGCTCGTTCAGGAATCCTCCGACTCTGTTCAGGTTCAGAGCATTTTGGACGATAGTTATGACCCCCTCAATCTCCCTTACCCTGAGGGATCTGTGTTCGTCGAACTTATGAATCAATTGAATTCAAATCCTTCCCTTGCCCTTCAGGTGTTTAGTTGGAGAAGGAAAAGATATAATGCTGAAAACCCTATGGACCCGATAGAGTACTCAAAGGGTATAACAGTTGCAGGTAGATCTGGGAATGTTGATTTAGCTGTTAAGCTCTTTAAGGAGGCTGCTATCCGAGGTCTCAAGACGACCAGCACTTACAATGCGCTAATGAGTGCCTTTTCGGTCAATGGTCTTGCTGATAGCTGTCAGTCCTTGTTTTGTGATCTGAAGAGGGATCCAACTTGCGATCCTTCTATTGCCACATACAACATTCTTATATCTAGTTTTGGTAGCTTGATGCTGGTTGATCACATGGAAGCAACATTCAGTGAGATACAAAAGTTAGACCTTGCCATGAACATCATGACTTATAATAATTTAATTGCTGGATATATCACAGCTTGGATGTGGGATGATATGGAAAAGGTGTTTCAAATGTTGAAGTCGAGCCCTGTCCAGCCAAACAAGAAAACCTACCTGCTAATGCTTCGCGGGTATGCAAATTCAGGTAATCTGGAAAAGATGGAAGAGATTTATTCCTTGGTAAGGGATCATGTAAATGAAAATGAAATTCCATTAATCAGATGTATGATATGTGCCTATTGTAGAAGTTCTGAAGCAGATAAACTGAAGAAGATAGAGTTACTGTTGAAGTTTATTCCAGAAAAGGAGTACACACCATGGTTAAATGTAATGCTGATTAAACTCTATGCCAAGGAAGACTGGTTAGAGAAGATGGAGAATGCTATAAATGAGGCTTTTGAACATGGAACCTCTATAAATAACAAGGGTATTATGAAATGCATCGTTGCAAGTTATTATCGGTGCAATGCGGTAGAAAAGCTAGAAAATTTTGTGAGACGTGCTGAAATCTCTGGGTGGAGTATCTGCCGTTCCTTATATCATTGTAAACTGGTCATGTATGGGACACAGAAGCCCTTACATGAATTGCAACGTGTCCTTGTGGAGATGGAAAATGTCAGGCTTGATTGCACGTTGAAAACATTATGGATAATGCACAAAGCTTACACCAGCCGTGGCCAGAGTTCCATGGTTTTAAAAACACTCGGAAAAATGTTCAAACATGGTTATCAATTTCCTTTGGCTGCATTTCCATCATAA 1512 0.4134 MKRVWRFSSDAAARVQLLLFQSHFHGFSKPKIIPSFSTALSYRKLNTVSNPVSDLIPLFTSKACSSTKMDLVNTVMILRNRLVQESSDSVQVQSILDDSYDPLNLPYPEGSVFVELMNQLNSNPSLALQVFSWRRKRYNAENPMDPIEYSKGITVAGRSGNVDLAVKLFKEAAIRGLKTTSTYNALMSAFSVNGLADSCQSLFCDLKRDPTCDPSIATYNILISSFGSLMLVDHMEATFSEIQKLDLAMNIMTYNNLIAGYITAWMWDDMEKVFQMLKSSPVQPNKKTYLLMLRGYANSGNLEKMEEIYSLVRDHVNENEIPLIRCMICAYCRSSEADKLKKIELLLKFIPEKEYTPWLNVMLIKLYAKEDWLEKMENAINEAFEHGTSINNKGIMKCIVASYYRCNAVEKLENFVRRAEISGWSICRSLYHCKLVMYGTQKPLHELQRVLVEMENVRLDCTLKTLWIMHKAYTSRGQSSMVLKTLGKMFKHGYQFPLAAFPS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00084 503 PANTHER EXPRESSED PROTEIN 42 501 IPR044179 GO:0003729
Lapu1g00084 503 Pfam PPR repeat family 179 226 IPR002885 -
Lapu1g00084 503 Pfam PPR repeat family 250 298 IPR002885 -
Lapu1g00084 503 Gene3D Tetratricopeptide repeat domain 72 244 IPR011990 GO:0005515
Lapu1g00084 503 Gene3D Tetratricopeptide repeat domain 245 315 IPR011990 GO:0005515
Lapu1g00084 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00084 158 387 Miscellaneous Gene Families AT4G11690 23.247 1.08e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00084 - - gmx:100792116 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00084 1 5143988 5148018 Lapu1g00084 1 5143988 5148018 ECH