Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01148 ATGGAGGACATTGAAGATTTGCTGGTTGGAAGCAGAAGCGCAACTCCACCGGGCTTCCGTTTGCCGTTAGAGGCGGCTGTGGGCGTCGGTGTTGGTGTTGGGAGCAAGCGGAATAAACTCTCTTCTGCGCCTTCTCCTGCAATTCCCGGCACTCAGACTATCTACATAAAGACCTTTGGCTGCTCTCACAACCAGAGTGACAGTGAATATATGGCTGGGCAGCTTTCGGCATTTGGTTATTCGTTGAGTGACAACCCAGACCAAGCAGATCTCTGGCTCATTAACACTTGCACAGTGAAATCCCCCAGTCAATCTGCCATGGATACCATAATAACAAAAGGAAAATCTTCTAATAAACCGCTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGATATTTGAAAGAGCTGGAAGGGATCAGCATAGTTGGAGTCCAGCAAATTGATCGTGTTGTTGAAATTGTAGAGGAAACTTTGAAAGGTCACGAAGTGCGCCTTTTAACTCGTAAGAAATTGCCCGCACTTGACCTTCCAAAGGTAAGGAAGAACAAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGCCCGGGGTCACCTAGGAAGTTACACGATTGATAGCCTTGTTGGGCGTGTAAAATCTGTCATTTCTGATGGAGTTAAAGAGATATGGCTTAGCAGTGAGGACACTGGAGCATATGGTCGTGACATTGGTGTCAATCTTCCAACTCTGTTGAATGCCTTAGTGGCAGAACTACCAGCTGATGCAAGCACAATGCTACGTATTGGAATGACCAATCCACCTTATATCCTTGAACACTTGAAAGAGATAGCCGAGATTTTGCGGCATCCTTGTGTGTACTCTTTTCTGCATGTACCAGTTCAATCTGGAAGTGATACTGTTTTGAGTGCAATGAATAGGGAATATACTGTAAGTGAGTTCAGGACTGTTGTAGATACTCTTACTGAACTTGTGCCAGAGATGCAGATTGCCACTGATATAATATGTGGATTTCCTGGTGAAACTGATGAAGATTTTGAGCAGACTGTCAATCTTGTTAAGGATTACAAGTTCCCTCAAGTTCACATTTCACAATTTTATCCTCGACCAGGGACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTTAAGAGAAGAAGCCGAGAACTGACAAATGTCTTTGAATCCTTCACACCGTACTCTGGGATGGAAGGCAAAGTGGAAAGAATTTGGATTACTGATGTTGCATCTGATGGAATTCACTTGGTTGGCCATACGAAAGGATATATACAAGTTCTTGTACTTGCTCCAGACCATATGCTGGGAGCTTCAGCTACGGTTAAGATAACATCTGTGGGAAGGTGGTCTGTTTTTGGGGAAGTAATTGAGACAGTCGACCATATAACTGACAATAAAGCTCCTCGAAACAAGCTGGTTTTCGATCGGGACTTGCATTCTCTCTGCGTTAAACCAGCCAAGGCTGGTGGATTCTCAGAAGAACCAGAATCTTGTGCCTGTGGAAGTGACGTCTGTTGTGGTATCGATAAGAGTGATATTTCAACAGGCACTGCAGTGCCACAGAACCAAAGCAATAGAAATTTCATTGGATGGATGCTAAGGAAGCGGGAGCTTCTGCACAAAAAGGTTGACAGTGAACTTGCATCGGGATCTGTTAAAAAGCAGGAAAGAAGGATAAAGAAGTGGGACTTCGTTGATAAGGTTCTTTTGGGTGGAATATCTATCAGCGTCTTGACTATTATTGCTCTAGCAGTAGCTCTTGCGTTCAGAGTAATTTGGTCCCACTAA 1845 0.4401 MEDIEDLLVGSRSATPPGFRLPLEAAVGVGVGVGSKRNKLSSAPSPAIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYSLSDNPDQADLWLINTCTVKSPSQSAMDTIITKGKSSNKPLVVAGCVPQGSRYLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKKLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISDGVKEIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLRIGMTNPPYILEHLKEIAEILRHPCVYSFLHVPVQSGSDTVLSAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGETDEDFEQTVNLVKDYKFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFESFTPYSGMEGKVERIWITDVASDGIHLVGHTKGYIQVLVLAPDHMLGASATVKITSVGRWSVFGEVIETVDHITDNKAPRNKLVFDRDLHSLCVKPAKAGGFSEEPESCACGSDVCCGIDKSDISTGTAVPQNQSNRNFIGWMLRKRELLHKKVDSELASGSVKKQERRIKKWDFVDKVLLGGISISVLTIIALAVALAFRVIWSH* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01148 614 ProSiteProfiles Radical SAM core domain profile. 181 414 IPR007197 GO:0003824|GO:0051536
Lapu11g01148 614 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase 53 172 - -
Lapu11g01148 614 CDD Radical_SAM 189 393 - -
Lapu11g01148 614 SMART MiaB 185 409 IPR006638 GO:0003824|GO:0051536
Lapu11g01148 614 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 52 160 IPR013848 GO:0035596|GO:0051539
Lapu11g01148 614 PANTHER RADICAL SAM PROTEINS 1 609 - -
Lapu11g01148 614 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 53 470 IPR005839 GO:0006400|GO:0016740|GO:0051539
Lapu11g01148 614 ProSiteProfiles TRAM domain profile. 414 476 IPR002792 -
Lapu11g01148 614 Pfam Radical SAM superfamily 192 364 IPR007197 GO:0003824|GO:0051536
Lapu11g01148 614 SFLD B12-binding domain containing 152 399 - -
Lapu11g01148 614 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase isoform X2 185 415 - -
Lapu11g01148 614 Pfam Uncharacterized protein family UPF0004 54 131 IPR013848 GO:0035596|GO:0051539
Lapu11g01148 614 ProSitePatterns Methylthiotransferase radical SAM domain signature. 189 209 IPR020612 GO:0051539
Lapu11g01148 614 SFLD Radical SAM 152 399 IPR007197 GO:0003824|GO:0051536
Lapu11g01148 614 Gene3D - 53 173 IPR038135 -
Lapu11g01148 614 NCBIfam tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase 54 475 IPR006466 GO:0035598|GO:0035600
Lapu11g01148 614 SUPERFAMILY Radical SAM enzymes 173 409 - -
Lapu11g01148 614 Gene3D tm_1862 like domain 183 413 IPR023404 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01148 K15865 - gmx:100798865 1059.28