Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01143 ATGGCCCAAGAACCCCACAACCCACCTCAAGATGTTCCTCTCCACACCCCGCCCGCCTCCGAAGCTCCCCAGGAGAAGACCCACACCGCTGTTCAAGACAAGATTTCCGAATCGGTTTCTTTCAAGGACGAGACCAACGTCGTTGGCGACCTCCCCGAGGCCCAGAAGAAAGCCCTTGATGACCTCAAGAAGCTTGTTCAAGACGCGCTTAACAACCATGACCTCACTGCGCCCAAGCCCCCCACTCCAGACCCAGAGAAGAACAAACCAGACATCGTCAAGGACCCAGACGTCCCAGCAGGAGAGGCGGAGAAGAAGGAACCGGAAGTTTCCCAAGAGAAGAAGGACGTTGAAGTGACCCAAGAGAAGAAGGAAATTGAAGTTACAGAAGAGACGGAGGAAGTGGAAGTGACAGAAGAGAAGAAGGATGTTGAAGTGACAGAAGAGAAGAAGGATGTTGAAGTGACAGAAGAGAAGAAGGATGTTGAAGCGACAGAGGAGAAGAAGGAAGTAGTAGCGATAGAAGAGAAGAAGGAAGTAGAAGCGACAGAGGAGAAGAAGGAAGCTGAAGCAACAGAGGAGAAGAAGGAAGCAGAAGCGACAGAGGAGAAGAAGGAAGCAGAAGTAACAGAAGAGAAGAAGGAAGTAGAGGTGACAGAAGAGAAGAAGGAAGTAGAGGTGACAGAAGTGAAGGAGGAAGTTGAAGTGACCGAAGAAGAGACGACAGCGGTGAAAGAGGAAGTTGGTCCGGAGGAAGTTGAGATATGGGGGATTCCGCTGCTGGCAGATGAGAGGAGCGATGTGATTCTGCTGAAGTTTCTGAGAGCGAGGGATTTCAAGGTGAAGGATGCATTCACCATGATCAAGAACACCGTGCGTTGGCGTAAAGAATTCGGAATCGACGCTCTTGTCCTGGAAGATCTTGGAACCGATTGGGACAAGGTGGTGTTCACCGATGGGCAGGACAAAGAAGGGCACCCCGTGTGCTACAACGTGTTTGGTGAGTTTGAGGACAAGGAGTTGTACAACAAGACCTTTTCGGACGAGGAGAAGCGCAACAAGTTCATCAGGTGGAGGATTCAGGTGCTGGAGAAGAGCGTGAGAAGCCTTGACTTCTCTCCCACTGCCATCTCCACCATTGTTCAGGTCAACGACCTTAAGAACTCTCCGGGACTTGGCAAGAGGGAACTCAGGCAGGCCACCAATCAGGCCCTTCAGTTGCTTCAGGATAACTACCCTGAGTTTGTGGCCAAGCAGATATTTATCAATGTTCCCTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCATTCTTCACACAGAGGACCAAGAGCAAATTTGTGTTTGCTGGGCCATCCAAGTCTGCCGAAACCCTTTTCAAATATATTGCTCCGGAGCTGGTGCCGCTTCAATACGGTGGACTGAGCAGAGAGGGTGAACAGGAATTCTCCACTGCTGATCCTGTTACGGAGGTCACAATTAAACCGGCAACCAAACATGCTGTGGAGTTCCCAGTTTCTGAGAAAAGCCATCTAGTTTGGGAAATCCGAGTGGTGGGTTGGGATGTGAGCTACGAAGCTGAATTTGTGCCCAGCGCTGAGGATGGATACACTGTGATTGTGCAGAAGAACAGGAAAATTGCTCCCGCAGATGAGACTGTGATCAGTAACGGTTTCAAAATTGGTGAAGCTGGCAAGGTTGTACTCACCATAGACAACCAAACATCCAAGAAGAAGAAACTCCTCTACAGGTCAAAGGCCAAAGCCATCGCAGAGTGA 1779 0.5008 MAQEPHNPPQDVPLHTPPASEAPQEKTHTAVQDKISESVSFKDETNVVGDLPEAQKKALDDLKKLVQDALNNHDLTAPKPPTPDPEKNKPDIVKDPDVPAGEAEKKEPEVSQEKKDVEVTQEKKEIEVTEETEEVEVTEEKKDVEVTEEKKDVEVTEEKKDVEATEEKKEVVAIEEKKEVEATEEKKEAEATEEKKEAEATEEKKEAEVTEEKKEVEVTEEKKEVEVTEVKEEVEVTEEETTAVKEEVGPEEVEIWGIPLLADERSDVILLKFLRARDFKVKDAFTMIKNTVRWRKEFGIDALVLEDLGTDWDKVVFTDGQDKEGHPVCYNVFGEFEDKELYNKTFSDEEKRNKFIRWRIQVLEKSVRSLDFSPTAISTIVQVNDLKNSPGLGKRELRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFFTQRTKSKFVFAGPSKSAETLFKYIAPELVPLQYGGLSREGEQEFSTADPVTEVTIKPATKHAVEFPVSEKSHLVWEIRVVGWDVSYEAEFVPSAEDGYTVIVQKNRKIAPADETVISNGFKIGEAGKVVLTIDNQTSKKKKLLYRSKAKAIAE* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01143 592 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 489 583 IPR036598 -
Lapu11g01143 592 SUPERFAMILY CRAL/TRIO N-terminal domain 45 306 IPR036273 -
Lapu11g01143 592 Coils Coil 121 141 - -
Lapu11g01143 592 SMART CRAL_TRIO_N_2 266 291 IPR011074 -
Lapu11g01143 592 MobiDBLite consensus disorder prediction 1 49 - -
Lapu11g01143 592 Coils Coil 172 247 - -
Lapu11g01143 592 SMART sec14_4 309 477 IPR001251 -
Lapu11g01143 592 MobiDBLite consensus disorder prediction 229 248 - -
Lapu11g01143 592 Gene3D - 213 503 IPR036865 -
Lapu11g01143 592 ProSiteProfiles GOLD domain profile. 456 587 IPR009038 -
Lapu11g01143 592 SUPERFAMILY CRAL/TRIO domain 316 476 IPR036865 -
Lapu11g01143 592 MobiDBLite consensus disorder prediction 69 222 - -
Lapu11g01143 592 CDD SEC14 311 475 IPR001251 -
Lapu11g01143 592 MobiDBLite consensus disorder prediction 139 222 - -
Lapu11g01143 592 PRINTS Cellular retinaldehyde-binding protein signature 269 291 - -
Lapu11g01143 592 PRINTS Cellular retinaldehyde-binding protein signature 466 475 - -
Lapu11g01143 592 PANTHER PATELLIN-1 169 589 IPR044834 GO:0008289
Lapu11g01143 592 Pfam CRAL/TRIO domain 314 474 IPR001251 -
Lapu11g01143 592 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 320 480 IPR001251 -
Lapu11g01143 592 MobiDBLite consensus disorder prediction 84 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01143 Lapu-Chr11 13438038 13441285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01143 270 469 Acyl Lipid Metabolism Gene Families AT1G55840 28.571 6.34e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01143 K19996 - gmx:100794623 620.542