Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01049 ATGGATGGTTACGAAGCTACACGAATTGTGTTCTTAAGGGTCCAAACTTTGGACCCAGAAAATGCTTCCAAAATCATGGGTTTACTTCTGCTTCAAGACCATGGTGAAAAAGAAATGATTAGATTAGCATTTGGTCCAGAAGCAATTGTTCACTCAGTGGTTGTTAAAGCCCGCAAGAAGTTAGGTTTACCCTCAAACTCTCCGCCAACACCCTCCACTCCTCCTTCTCCTTCACCCTTGCTTCCTAGGCAGAACTCTACTTCTTCAAGGCTCAGTGGTATCAACCTCCCTCCTGCTCTCATCATTCCAAATCCTTCTTCTACTTCTTCTTCATGGCCTACTATGTCTGAGCTTCAAACCCCAGATGGCTTGATGAGCCCCAACCATTTGGTTGTTGGCTCTTCTACTTCTTCATCTTCCTTATCCTTTTATGCAAATGGAGGCTCGGATCCAATTGATGACTTCCAACTTCAAGACCAGCTCTCTTTCCTGAACGATGGTTCTGCTCCTGCTCACAAAAACAACCCTGATTTATTTTACCCTCGTCACTCAGACTTGTCTTCAAGTCCTACTGCTGCTTCTGACCCTACTCTCTTTCCCTCCTACGATTGGGGAGGGTCTCTTCACCGCAGGAGTTGTTCGGTCAATGATGTTTGTTTGGGCTCTGAGGACTCCAATTCCGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCTAGGGGGTACTGTAAAAATGGCACCAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATACTGATGCTGCTCCTCCTGCTGCAATGGTTGGGTCTCCTAGTAAGATTGAGATGATGGAGCAGTGTCATGAGCTTTTCAGATCTAAATCTTCACAACAACAAAGATTGGCCGCTGCTTCTCAGCTCATGGCCTCTTCTACTTTTCCATACACCCCAAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAATGATACTCAAAGAGCTGCTGCAGCAGCTCTAATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTCTTAACAGTCCTGGAATGGTAAACCCAGCTTCCAGGCAGATCTACTTGACTTTCCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCGAATTACTTCAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGTTTTGTTACCTTTGTTTATCCGGAGACTGTGAAGCTTATACTATCAAAAGGAAATCCTCATTTTGTATGTGATGCCCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCGGACAAGTACAGGAAGCAGCAGATAGATAGAGGCGATTTTTCACCGAGTGGTACTCCTACTGGAGTAGATGCTAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTCCAATACTCAAGACATGTTGTGGAGAAGGAAGCTGGAGGAGCAAGCTAATTTGCAGCAAGCTCTTGAGCTCCAAAGTAGGAGGCTAATGGGTCTGCAGCTTCTTGACATCAAGAAGCATCATCAGCGCGCACTCTCCACTGGAAGTCCAATTCCTTCCCCCACCCACTCTCTTAACATGTTCAACCAAGATCATGTTCTTCCTTCCTTTCGCAATATTTTCGAGGCCCCGAAGGAGAATGGTTCAACTTCTGCTCCACCTAGTACTGCTTCAGTTTCTGCTGGTCAGCAACCTGTCAACATTTCTGTTGGCAAGGAAGTGGTGGTCAGTGGCGAGAATGGATTGAATGAAGGCAATGACAAGCAGAACTCTAGTCATGAGGATATTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGAGACTTGATGGTTTCCTTTTCCAATGGAACTGTTGAGGCCATTGACACAGATGCCTCAGGTGCGTCTGCCAACTCCAAATTTGGTACCAGTGCATTACATCCACCAACATCTGCCATTGACATGGGGACTTTCAAATCCTATAACTGCCAAATACCAAGGTTCTCTTCTGGCCATGGAACTTTTGGGATGTTCCCAGGCACGGGTGGAGCGATTGGCATTTAG 2118 0.4599 MDGYEATRIVFLRVQTLDPENASKIMGLLLLQDHGEKEMIRLAFGPEAIVHSVVVKARKKLGLPSNSPPTPSTPPSPSPLLPRQNSTSSRLSGINLPPALIIPNPSSTSSSWPTMSELQTPDGLMSPNHLVVGSSTSSSSLSFYANGGSDPIDDFQLQDQLSFLNDGSAPAHKNNPDLFYPRHSDLSSSPTAASDPTLFPSYDWGGSLHRRSCSVNDVCLGSEDSNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDTDAAPPAAMVGSPSKIEMMEQCHELFRSKSSQQQRLAAASQLMASSTFPYTPKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQIDRGDFSPSGTPTGVDARDQFDLQLGGRMFSNTQDMLWRRKLEEQANLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSLNMFNQDHVLPSFRNIFEAPKENGSTSAPPSTASVSAGQQPVNISVGKEVVVSGENGLNEGNDKQNSSHEDIDLQECLEHNLPDSPFASPTKAAGDLMVSFSNGTVEAIDTDASGASANSKFGTSALHPPTSAIDMGTFKSYNCQIPRFSSGHGTFGMFPGTGGAIGI* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01049 705 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 630 - -
Lapu11g01049 705 MobiDBLite consensus disorder prediction 556 577 - -
Lapu11g01049 705 SUPERFAMILY RNA-binding domain, RBD 375 452 IPR035979 GO:0003676
Lapu11g01049 705 SMART c3hfinal6 230 254 IPR000571 GO:0046872
Lapu11g01049 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 363 439 IPR000504 GO:0003723
Lapu11g01049 705 Gene3D - 222 305 - -
Lapu11g01049 705 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 370 441 - -
Lapu11g01049 705 CDD RRM_AtC3H46_like 365 434 IPR034365 -
Lapu11g01049 705 ProSiteProfiles Zinc finger C3H1-type profile. 228 255 IPR000571 GO:0046872
Lapu11g01049 705 MobiDBLite consensus disorder prediction 67 81 - -
Lapu11g01049 705 MobiDBLite consensus disorder prediction 61 100 - -
Lapu11g01049 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 253 IPR000571 GO:0046872
Lapu11g01049 705 SUPERFAMILY CCCH zinc finger 231 253 IPR036855 GO:0046872
Lapu11g01049 705 Gene3D - 361 462 IPR012677 -
Lapu11g01049 705 SMART rrm1_1 364 434 IPR000504 GO:0003723
Lapu11g01049 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 375 420 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01049 Lapu-Chr11 12764986 12771732 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01049 - - gmx:100801341 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g01049 11 12764986 12771732 Lapu11g01049 11 12764986 12771732 ECH