Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01048 ATGGATGGTTACGAAGCTACAAGAATTGTGTTCCAAAGGATCCAGAACTTGGACCCTGAAAATGCATCCAAAATCATGGGTGTACTTCTTCTGCAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGCCCAGAAGCACTTGTTCACTCTGTGATTCTCAAAGCCCGCAAGGAGTTAGGTTTACCTTCGAACTCTCCGCCAACTCCTTCCACTCCTCCTTCTCCTTCACCCTTCCTTTCCAGGCAAAGTTCTACTTCTTCCAGGCTTGGTGGAGTCAACCTACCTCCCGCTCTCACCATTCCAAACCCTTCTTCTACTTCTTCTTCATGGCCCACTATGTCTGAGCTTCAAACCCCAGATGGTTTGATGAGCCCCAACCATTTGGTTGTTGGTTCTTCTACTTCCTCATCTTCCTTACCCTTTTATGCAAACGGAGGCTCAGATCCAATTGATGACTTCCAACTTCAAGATCAGCTTTCTTTCCTTAATGATGGTTCTCCTACTAGTACTGCTCTTGCTCACAAGAACAACCCAGATTTGTTTTACCCAACTCACTCAGACTTGTCTTCAAGTCCTACTGCTGCTGCTGACCCTTCTCTCTTTCCTTCCTATGGTTGGGGAGGGTCTCTTCATCGTAGGAGTTGCTCAGTCAATGATGCTTGTTTAGGCTCTGAGGACCCCAACTCCGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGTAAAAATGGGACAAGTTGCAGGTTCCTTCACGGTGGACTTGGAGATGCAGATGGTGCTGCTGCAATGGTAGGGTCTCCTAGCAAGATTGAGATGATGGAGCAGTGCCACGAGCTCTTCAGATCCAAATCTTCTCAGCAGCACAGGTTGGCTGCTGCTTCTCAGCTCATGGCCTCTTCCACTTTTCCATACTCTCCTAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAATGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTTGAACAGTCCTGGAATGGTAAACCCAGCTTCCAGGCAGATCTACTTGACTTTTCCAGCAGATAGCACTTTCAGAGAGGAGGATGTTTCAAATTACTTCAGCATTTATGGTCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGCTTTGTGACATTTGTTTACCCTGAGACTGTAAAGCTGATTCTATCTAAAGGAAATCCTCATTTTGTGTGTGATGCTAGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTTCCGGACAAGAAGCAGCAACAGGTTGATAGAGGAGATTTTTCACCTTGTGGTACTCCTACTGGATTAGAGGCTAGAGAGCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATACTCAGGACATACTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCAAGCTCTTGAGTTACAAAGTAGGAGGCTAATGGGTCTGCAACTTCTAGACATCAAGAAGCATCACCAGCGTGCATTCTCCACTGGAAGTCCAATTCCTTCCCCCACCCACTCTCCTAACATGTTCAACCAAAATCTTGTTCTTCCTTCCTTTCACACTAGTTCAGAATCCCCAAAGGAGAGTGGTTCAGCTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTCAGCAGCCGGTCAACATATCTGTTGGCAAGGAAATGGTGGTCAATGGAGAGAATGGATATAATGAAGGCAATGGAAAGCAGAGCCCTAGTCATGAAGATCGTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGTGACTTCATGGTTTCCTTCTCCAATGGACCTAATGAGTCCATTGATGCAGATGCCTCAGGTGCATCTGCCAACTCTAAATTTGGTACTAGCGCAATACTTCCACCTGCTTCTGCTCTTGACATGGGAACTTTCAAATCCTATAACTGCCAAATACCAAGGTTCTCTTCTGGTCATGGAACTATTGGGATGTTAGCAGGCACCGGTGGACCAATTGGCATTTAG 2118 0.4613 MDGYEATRIVFQRIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVILKARKELGLPSNSPPTPSTPPSPSPFLSRQSSTSSRLGGVNLPPALTIPNPSSTSSSWPTMSELQTPDGLMSPNHLVVGSSTSSSSLPFYANGGSDPIDDFQLQDQLSFLNDGSPTSTALAHKNNPDLFYPTHSDLSSSPTAAADPSLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGAAAMVGSPSKIEMMEQCHELFRSKSSQQHRLAAASQLMASSTFPYSPKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQVDRGDFSPCGTPTGLEAREQFDLQLGGRMFYNTQDILWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRAFSTGSPIPSPTHSPNMFNQNLVLPSFHTSSESPKESGSASAPASTASVSAGQQPVNISVGKEMVVNGENGYNEGNGKQSPSHEDRDLQECLEHNLPDSPFASPTKAAGDFMVSFSNGPNESIDADASGASANSKFGTSAILPPASALDMGTFKSYNCQIPRFSSGHGTIGMLAGTGGPIGI* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01048 705 SMART rrm1_1 365 435 IPR000504 GO:0003723
Lapu11g01048 705 MobiDBLite consensus disorder prediction 79 116 - -
Lapu11g01048 705 MobiDBLite consensus disorder prediction 524 543 - -
Lapu11g01048 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 421 IPR000504 GO:0003723
Lapu11g01048 705 MobiDBLite consensus disorder prediction 550 580 - -
Lapu11g01048 705 Gene3D - 226 299 - -
Lapu11g01048 705 MobiDBLite consensus disorder prediction 550 610 - -
Lapu11g01048 705 MobiDBLite consensus disorder prediction 61 116 - -
Lapu11g01048 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 440 IPR000504 GO:0003723
Lapu11g01048 705 SUPERFAMILY RNA-binding domain, RBD 376 450 IPR035979 GO:0003676
Lapu11g01048 705 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 371 442 - -
Lapu11g01048 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 257 IPR000571 GO:0046872
Lapu11g01048 705 SMART c3hfinal6 234 258 IPR000571 GO:0046872
Lapu11g01048 705 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 630 - -
Lapu11g01048 705 Gene3D - 312 455 IPR012677 -
Lapu11g01048 705 MobiDBLite consensus disorder prediction 443 463 - -
Lapu11g01048 705 MobiDBLite consensus disorder prediction 526 543 - -
Lapu11g01048 705 SUPERFAMILY CCCH zinc finger 235 257 IPR036855 GO:0046872
Lapu11g01048 705 CDD RRM_AtC3H46_like 366 435 IPR034365 -
Lapu11g01048 705 ProSiteProfiles Zinc finger C3H1-type profile. 232 259 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01048 Lapu-Chr11 12748750 12755963 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01048 - - gmx:100801341 1210.67