Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01041 ATGCTACTATTTGGGTCATTTACTGAAGATGAAACCCGATCACTGCTGTCAAAGCAGTCTTCTGGGGAAAATGAAAAGTCTGGGGAGAAGAATCAGCTGCAGTTTGGCTCTCTGAATTCTGTTTCTGTTGAGTCAAACAACCTGCAAAACTCATCAAAAGCATCAGTTAGTACTCCACCCTCTGATTCTCAGAAATGTAATGGAGTGAAAAATGTCAGTCATAATTCATCTGAAGTGTCAGGAGCAATTAAAGAGAATGGCAGCATTACCAATTTCTCCCCTAGCCCCACCAGTACCAGTAGTGTAAATGAAGTTGAAGAAAAAAATGCAAATTCTTTTACATTACTTGATGAAGATGTTCCCTCAAACAAGTTTACAAATTTGAACCTGGATGCTTCTGCGACTGAAAACTTGAAGAATGTACACAAATCTGGCAGTGGAGAGGATTCTTCATTAAAGTTCTTTGATCGAGAGCCCCCAAAGGCACCTAATGGGCATGCTGTTCTTCCTGTTAAAGATATACTGCCTCGAGGCCTTATCAACTCTGGGAATCTATGCTTTCTTAATGCAACCGTGCAGGCCCTATTGTCATGCTCACCTTTTGTTCATCTTTTACAGCAATTAAGAACTCGCGACCTTCCTAAGGTTGGATATCCTACATTGACAGCATTTGCTGAGTTCATTACCCAATTTGATATGCCAAGCACAACTAACATAAAGAAGCAAGATACAGATATGTTTGAGTCTGGAAGGCCATTTTGCCCTGTTATGTTTGAAGGTGTTCTAAAAAATTTTACTCCAGATGTGCCAAATAGCTTTTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGTTGAATTACTGAAGCTTGAAGGACAATCTTCAAGTCTTAATGGCACCAAATTTTCTGTTGTTTCTTCTGTGGAAGATGATGAATGGGAAACAGTGGGGCCAAAGAATAAATCTGCTGTAACAAGGACTCAAAGCCTTGACCCATCAGAATTAAGTGGTATTTTTGGGGGACAACTTAGAAGTTTGGTGAGAGCTCAAGGAAATAGAGCTTCGGCAACTGTTCAACCATATCTCTTACTCCATCTTGACATCTATCCTGACACTGTACACACGATTGAGGATGCACTTAGCCTGTTTTCCGCCTCAGAAACTCTTGAAGGGTACCGAACATCACTCACTGCAAAGGCTGGTGTTGTGACTGCAAGAAAATCTGTACAAATAATGACACTTCCTAAAATAATGATATTGCACCTGATGCGTTTTGGTTACGGAAGCCAGGGAAGCACCAAGTTGCACAAGGCTGTACGCTTTCCTCTTGAGTTGGTATTGGGTCGTGATTTGCTTTTTTCACCATCTACTGAGGGTCGAAAGTATGAACTTGTTGCTACAATTACTCACCATGGAAGGGAGCCTTCAAAAGGGCACTACACAGCCGATGCCCAATACCCCAATGGTCGGTGGCTACGATTTGATGATGCATCTGTCTTTGCTATTGGAACAAATAAGGTGCTGCATGATCAAGCATATGTCCTTTTCTACAGACAGCTGTGA 1593 0.4162 MLLFGSFTEDETRSLLSKQSSGENEKSGEKNQLQFGSLNSVSVESNNLQNSSKASVSTPPSDSQKCNGVKNVSHNSSEVSGAIKENGSITNFSPSPTSTSSVNEVEEKNANSFTLLDEDVPSNKFTNLNLDASATENLKNVHKSGSGEDSSLKFFDREPPKAPNGHAVLPVKDILPRGLINSGNLCFLNATVQALLSCSPFVHLLQQLRTRDLPKVGYPTLTAFAEFITQFDMPSTTNIKKQDTDMFESGRPFCPVMFEGVLKNFTPDVPNSFSGRPRQEDAQEFLSFVMDQMHVELLKLEGQSSSLNGTKFSVVSSVEDDEWETVGPKNKSAVTRTQSLDPSELSGIFGGQLRSLVRAQGNRASATVQPYLLLHLDIYPDTVHTIEDALSLFSASETLEGYRTSLTAKAGVVTARKSVQIMTLPKIMILHLMRFGYGSQGSTKLHKAVRFPLELVLGRDLLFSPSTEGRKYELVATITHHGREPSKGHYTADAQYPNGRWLRFDDASVFAIGTNKVLHDQAYVLFYRQL* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01041 530 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 23 529 - -
Lapu11g01041 530 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 177 530 IPR028889 -
Lapu11g01041 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 472 490 IPR018200 GO:0004843|GO:0006511
Lapu11g01041 530 FunFam Ubiquitin carboxyl-terminal hydrolase 168 529 - -
Lapu11g01041 530 SUPERFAMILY Cysteine proteinases 171 528 IPR038765 -
Lapu11g01041 530 Pfam Ubiquitin carboxyl-terminal hydrolase 178 527 IPR001394 GO:0004843|GO:0016579
Lapu11g01041 530 Gene3D Cysteine proteinases 168 529 - -
Lapu11g01041 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 178 193 IPR018200 GO:0004843|GO:0006511
Lapu11g01041 530 MobiDBLite consensus disorder prediction 1 105 - -
Lapu11g01041 530 MobiDBLite consensus disorder prediction 10 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01041 Lapu-Chr11 12690531 12695591 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01041 174 530 Miscellaneous Gene Families AT2G24640 28.767 2.06e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01041 K11841 - gmx:100799656 878.241