Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01040 ATGAATTCCCTCCTTCCAAAAACCCAACTTTCCGCTCCAATGAATTCAAAATCCAAACTTTGGACAAAACCAACCTCAACATCAACCAGCTGTAGCAGTAGCAGCAGCAGCAGCGAGAACGATGACAGCCCCTTTTGTTCCCAACGCATACCCATCGTTGTTTCTGCCTTCTTCAATTCTCACCGATCACTCGCAGTCCTCTCAGGACACGTGGGTTCCGTTTCATGCTTGGCCCTGTGCGGTGAGTTCATCCTGAGTGCCTCTCAGGGTAAGGATATCATAGTCTGGCAGCAACCGGATTTGAGGCTCTTTGCGAAGTTTGGACAAGGAGAAGGATCAGTGAAAGCACTTGCAACGGTTGGCAACAAGGTTTTCACCGCACATCAAGATAGCAGGATAAGAGTTTGGAAGGTGTCAAGAAGCTCGGAGAACGTGTTCAAGCTTGTCGATTCTCTTCCCACAACCAAGGACTATCTGGGGAAGTTCATGAAGCAGAGCAACTATGTCCAAACTCGGAGGCACCACAAGCGTTTGTGGATTGAGCATGCAGATAGCATTTCTTGCTTGACGGTTTATGATGGGTTGATTTATTCTGGGTCGTGGGATAAGACTCTTAAGGTGTGGAGGCTCTCGGATTTGAAGTGTTTGGAGTCAGTTAAGGCTCATGATGATGCAATCAATGGATTGGTGGCGTGTAAAGGGGTTGTGTATTCTGCTTCTGCTGATGGAAAGATTAAGGCTTGGGGGAGTAAAGAGGGGAAGGGGGAGCATTGTTTGAAGGGGGTTTTGGAGGGTCATAAGGATGTTTCTTTTAACGCTGTTGTTGTTTCTAACGATGGGAAGTGGGTTTACGGAGGAGGGTCCGATGGGTTTGTGATCGGGTGGGAGGGGAGTGGGGGTTCTGAGAGTTGGAAACTGGTTTCTGAGACCAAGGCACATGAAATGGCTGTGTTGTGTATGTGTCTGATGGGGGAGTTTTTGTGCAGTGGATCAGCGGATAAAAGCATAGGGATTTGGAGGAGAGAACCTTTTGGTAAGCTTTGTAAAGTTGGGGTCATCAGTGGCCATGAAGGGCCTGTGAAGTGTTTGCAAGCCTCGTCTAGTAGGATTGGTGGTGGGTTTTTATTGTACAGTGGAAGCCTTGACAAAAGTGTGAGAGTTTGGTGGGTTCCAAGGTATAATGATGCAGAAGTAGAGGATAATAGCTCTACACAATTTGGCACAATGAATAAGTCCATCCTCCCATGCTAG 1251 0.4748 MNSLLPKTQLSAPMNSKSKLWTKPTSTSTSCSSSSSSSENDDSPFCSQRIPIVVSAFFNSHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGEGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDSLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYDGLIYSGSWDKTLKVWRLSDLKCLESVKAHDDAINGLVACKGVVYSASADGKIKAWGSKEGKGEHCLKGVLEGHKDVSFNAVVVSNDGKWVYGGGSDGFVIGWEGSGGSESWKLVSETKAHEMAVLCMCLMGEFLCSGSADKSIGIWRREPFGKLCKVGVISGHEGPVKCLQASSSRIGGGFLLYSGSLDKSVRVWWVPRYNDAEVEDNSSTQFGTMNKSILPC* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01040 416 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Lapu11g01040 416 PRINTS G protein beta WD-40 repeat signature 124 138 IPR020472 -
Lapu11g01040 416 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Lapu11g01040 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 218 IPR001680 GO:0005515
Lapu11g01040 416 MobiDBLite consensus disorder prediction 16 44 - -
Lapu11g01040 416 Gene3D - 19 167 IPR015943 GO:0005515
Lapu11g01040 416 SUPERFAMILY WD40 repeat-like 61 392 IPR036322 GO:0005515
Lapu11g01040 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 388 - -
Lapu11g01040 416 Gene3D - 168 264 IPR015943 GO:0005515
Lapu11g01040 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 388 IPR001680 GO:0005515
Lapu11g01040 416 FunFam BnaA09g28200D protein 169 253 - -
Lapu11g01040 416 CDD WD40 63 388 - -
Lapu11g01040 416 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 17 392 IPR045182 -
Lapu11g01040 416 Gene3D - 265 406 IPR015943 GO:0005515
Lapu11g01040 416 SMART WD40_4 212 249 IPR001680 GO:0005515
Lapu11g01040 416 SMART WD40_4 60 97 IPR001680 GO:0005515
Lapu11g01040 416 SMART WD40_4 346 389 IPR001680 GO:0005515
Lapu11g01040 416 SMART WD40_4 256 296 IPR001680 GO:0005515
Lapu11g01040 416 SMART WD40_4 172 209 IPR001680 GO:0005515
Lapu11g01040 416 SMART WD40_4 303 340 IPR001680 GO:0005515
Lapu11g01040 416 SMART WD40_4 100 137 IPR001680 GO:0005515
Lapu11g01040 416 Pfam WD domain, G-beta repeat 261 293 IPR001680 GO:0005515
Lapu11g01040 416 Pfam WD domain, G-beta repeat 350 388 IPR001680 GO:0005515
Lapu11g01040 416 Pfam WD domain, G-beta repeat 181 208 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01040 Lapu-Chr11 12686457 12687929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01040 182 344 Miscellaneous Gene Families AT5G08390 28.571 2.75e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01040 - - gmx:100775295 712.22