Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01028 ATGGCTAGTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTGTTGAGTTCATCTTACCATTACTCTGATATTATAGAAAAGCTTTCTTATGGAAGTGACTTTGGATCCACACACTATCAGATTGTTTCAACAAAATCAGTGATAGTTGCCAAGAAGTCATCCAACTACACTCCAACTTTTCCTGCATCGAACCGGCAGAATCAGTCCATTAAGGCTCTCAAGGAGCATGTTGATGATGCTGCTACCATTGTGGATACATGGTTCCAGAGTTCCAATTCTAATGACTTAGAACTGGAAAGCTCTGAAATGGGTTATTCTGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAGCAATGGAGCCTTTCCTTTGAAAGGGAGGTGCTAACCGAACATTCTAGTAGAGCAGAAAACCGTAGGAAAGTGGCAGCAGTGACCTGTTCTGGTGTGTCTGCAAGGCAAAGAAGAATGAATGCCAAGCGGAAGACCACGGTCAAAACCTGTGGTACTATGCAGCCGAAGTCCAAAATCAGTCCAGAGCTGCTTCAAAACCGTTTGAAGGGCTATGTGAAAGGAGTAGTGAGTGAGGAATTGCTCTCTCATGCAGAAGTTGTAAGCCTATCGGAGATTATAAAAGTTGGGCTTTCCTTAGAGGAGCATAAATCCAGGCTGAAGGAGAGACTAGGCTGTGAACCCTCTGACGATCAAATTGCAACTTCGTTGAAGATTTCTCGTACTGAACTTCGAGAAAAAATGCTAGAGTGCTCTCTGGCAAGAGAAAAGTTGGCTATGAGCAATGTTCGCTTAGTTATGTCTGTTGCTCAAAGATATGATAACGCTGGTGCTGAAATGGGTGACCTTGTTCAGGGCGGCTTGATTGGACTACTTCGTGGTATTGAAAAGTTTGATTCTTCAAAGGGGTTTAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCCTTAATTGAGAATTCAAGAACGTTAAGATTGCCAGCTTATTTGCATGAGAGATTATCTTTAATCCGCAATGCAAAGTTTAGACTAGAAGAGAGAGGCATTGCTCCAACCATTGATAGGATTGCAAAACACCTTAACATGTCTCAAAAGAAAGTCAGAAATGCTACTGAGGCAATCAACAAAACTATCTCGCTTGATAGAGAAGCATTCCCCTCTTTGAATGGTCTACGAGGAGAAACTCATCATAGTTACATTGCAGATAATCGCGTTGAGAACATCCCGTGGAATGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAACAAACTCATGAATGTGACCCTTAAGGAACGAGAGAGAGAAATTATTCGACTTTATTATGGACTTGATAAAGAATGTCTTACATGGGAAGACATTAGTAAACGGATGGGTTTATCAAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCAAGGAAGAGAGAATTGGAGGCCATGCTAGTGAAACATTAA 1515 0.4191 MASAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVSTKSVIVAKKSSNYTPTFPASNRQNQSIKALKEHVDDAATIVDTWFQSSNSNDLELESSEMGYSVEALLLLQKSMLEKQWSLSFEREVLTEHSSRAENRRKVAAVTCSGVSARQRRMNAKRKTTVKTCGTMQPKSKISPELLQNRLKGYVKGVVSEELLSHAEVVSLSEIIKVGLSLEEHKSRLKERLGCEPSDDQIATSLKISRTELREKMLECSLAREKLAMSNVRLVMSVAQRYDNAGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALIENSRTLRLPAYLHERLSLIRNAKFRLEERGIAPTIDRIAKHLNMSQKKVRNATEAINKTISLDREAFPSLNGLRGETHHSYIADNRVENIPWNGVDEWALKDEVNKLMNVTLKEREREIIRLYYGLDKECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKRELEAMLVKH* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01028 504 Gene3D - 336 387 IPR036388 -
Lapu11g01028 504 Gene3D - 420 499 IPR036388 -
Lapu11g01028 504 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 188 335 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lapu11g01028 504 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 420 495 IPR013324 -
Lapu11g01028 504 NCBIfam sigma-70 family RNA polymerase sigma factor 261 491 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lapu11g01028 504 Pfam Sigma-70 region 3 344 415 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lapu11g01028 504 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 337 393 IPR013324 -
Lapu11g01028 504 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 116 501 - -
Lapu11g01028 504 Pfam Sigma-70, region 4 441 490 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lapu11g01028 504 PRINTS Major sigma-70 factor signature 289 302 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu11g01028 504 PRINTS Major sigma-70 factor signature 477 488 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu11g01028 504 PRINTS Major sigma-70 factor signature 313 321 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu11g01028 504 PRINTS Major sigma-70 factor signature 462 477 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu11g01028 504 PRINTS Major sigma-70 factor signature 442 454 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu11g01028 504 Gene3D RNA Polymerase Primary Sigma Factor 46 335 - -
Lapu11g01028 504 Pfam Sigma-70 region 2 267 334 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lapu11g01028 504 CDD Sigma70_r4 431 489 - -
Lapu11g01028 504 ProSitePatterns Sigma-70 factors family signature 1. 289 302 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01028 Lapu-Chr11 12604982 12609736 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01028 K03086 - gmx:100801884 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g01028 11 12604982 12609736 Lapu11g01028 11 12604982 12609736 ECH