Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01017 ATGTTTGAGATGGGAGTTACAGGTTTTGAAATTAATGGGAATTCTGCTTATGCTTCTGTTTTGCATTTTGGTGCCAATTCGTTATCTTCATATTCGGTTCCTATTTCTTTGAGACCCTTTTTTGGGAATGCTTTGAACGCGAGGTTAACGGGGAAGATTCGGGTTTCTCACACTCGGAAGCTGAATTTCGGTGCAGTTACTGCTTCACTGAATGGTGGCTCTAATGTTGGGTTGATTAGTGATGAGCTTCTTCTGAAAGACTCAGAATTTAAGCCTTCCTTTGACGAATATTTGAAGGCTATGGAATCTGCCAGAACTGCGAGGGGCAAGAAGCGTGTTGCCAGTACTAGAAAACAGAAGATGACGGAAAAGGGTGATGGCACTAAAAAAAATAGCAGTGCAAGAGTGAAAATTGAGAGAAAAGATGGGCTTGAAGAAGGTGCTCAAGAAGGTTCCTCCAGAAGTAGCGGCAAGGTCAGAAGAACACCTACTAAAGGATTTAGAAGAGAAAATGGGAAAGAAAACAACCTTGATATGAAGGCAAAGCAGAAAAATGGGTTGTTGAAACGCCGGAGTCATAGTTTAGAAGCAGAATCTAGGAGTATAATTAGGTCTAGTTTGAATGGTAGCCGTGGGAGTGTCGTAAAGAGGGGAGTTATTTATGATTTATATTCTTCAAAGGTTATGGGGGAGAAAGTTGTTGGTAGCAGACAAAGGGGTTACAACACAGAGGGTAAAATCCCTGATAGAGATAAAATTGTAGTTACACAAAAAGTTCAGGATAGAGGGCTTGTAAGAAGACACAGTGAGAATGGAAGTTTTATAAATAGAAATAGTCTGTCAAATGTCAAATTGAATAAAAGCCGCAAGCGTTTCATTGACAGGGGTTATGATTCTGATAGTCTGGCGGTGGAACGAGCAGCATTTGAGAATCTGGAGGACCCGAACAAGGTTATCAGAAAATTACAATTTTCACACAAGGAAATGGAGGAGAAAATCCAAAAGCTAGCCAATTTGTTAAATGGTGCAGATATCGATTTACCTGAATGGATATTTTCTAAGATGATCAGAAGTGCAAGGCTTAAATTTTCTGACTATTCCATAACAAGGATTATCACAATCTTGGGAAAACTGGGAAACTGGCGGCGAGTGATACAGGTGATTGAATGGCTTCAAAAGCGTGAACGTTTCAAGTCCCCTAAGCTAAGGCATATATATACTGCTGCTCTTGATGCACTTGGAAAGTCGAGGAGACCTGTAGAGGCACTAAATATATTTCATGCAATGCAGCAACAAATGTCCTCGTATCCTGATTTAGTAGCTTATCGGAGTATTGCTGTGACTCTTGGACAAGCAGGGCACATGAAGGAACTCTTTGATGTGATTGATATTATGCGATCACCACCTAAGAGAAAGTTCAAAACAGGGGTATTTAATAACTGGGACCCAAGGCTGGAACCAGATTTTGTAGTCTATCATGCAGTCCTTAATGCTTGTGTTAGGCAGAAACAATGGGAAGGAGCCTTTTGGGTTTTGCAGCAGTTAAAGAAGCAAGGACTACAACCTTCTGCCACAACTTACGGCCTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTATAACTTGGTTCATGAATTTTTCAGAAAACTTCAGAAGTCTTTCATTCCCAATTCATTGACATATAGAGTTCTTGTGAATACACTGTGGAAAGAGGGAAAAACTGATGAAGCTATATTGGCTGTCCAAGAAATGGAAAATCGTGGAGTTGTAGGTTCGGCTTCTCTTTATTATGATCTAGCTCGATGCCTCTGTGCAGCTGGAAGAAGTCACGAGGCACTAAAGCAGATAGACAAGATATGTAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATGCAAGCAAGTATAGACTCTGGAAATATCCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAGTTTGTGCTCCAAATCTGGTTACTTGTAACATAATGCTCAAAGCTTACTTGGAACATGGCATGTTTCAAGAAGCTAAAGCGTTGTTTGAGCAGATGTCAGAAAATGCTAATTCTCTGAGGGGATCTGCTGATTACAAGATGCTGGTGGTACCAGATACATACACATTCAACACCATGTTAGATGCATGTGTTTCAGAGCAGATATGGGATTATTTTGATCATGTCTATCAAAGGATGTTGTACCACGGTTACCACTTCAATCCAAAACGCCATCTTCAAATGATTTTGGAGGCTTCAAGAGCAGGAAAGGAACGGCCTTTGGAAATAACATGGAAACACTTAACCGACATGGATAGAACTCCACCAACTTCTATGATCAAGGAGAGATTTTGTGCTAAGCTTGAGAAAGATGAGTATGTTGCTGCTCTCACATGTATGACCAACAATCTCCCAGAGGACTTGCAGCCATTTTCCAAATCGTCTTGGTTGAAACTATTAAAAAGTAATTCTCACAGGTTTCAGAAGCATACGATTGTTGGACTAATGAACGAGGCCAGCAAAATAGTTTCCAATAATAGTTTACCAAATCCAACACTTGAGTATCTAATACAATCATGCAAAAAAATTCTTTTTGTCACTGACATCAGTGAAGCTGACATGGATTCAGTGAAAAATGTACTTGAAGGTGAAGTAGAGAGTAAGGTGGTAATAGCCAACTCTAGATGA 2694 0.4013 MFEMGVTGFEINGNSAYASVLHFGANSLSSYSVPISLRPFFGNALNARLTGKIRVSHTRKLNFGAVTASLNGGSNVGLISDELLLKDSEFKPSFDEYLKAMESARTARGKKRVASTRKQKMTEKGDGTKKNSSARVKIERKDGLEEGAQEGSSRSSGKVRRTPTKGFRRENGKENNLDMKAKQKNGLLKRRSHSLEAESRSIIRSSLNGSRGSVVKRGVIYDLYSSKVMGEKVVGSRQRGYNTEGKIPDRDKIVVTQKVQDRGLVRRHSENGSFINRNSLSNVKLNKSRKRFIDRGYDSDSLAVERAAFENLEDPNKVIRKLQFSHKEMEEKIQKLANLLNGADIDLPEWIFSKMIRSARLKFSDYSITRIITILGKLGNWRRVIQVIEWLQKRERFKSPKLRHIYTAALDALGKSRRPVEALNIFHAMQQQMSSYPDLVAYRSIAVTLGQAGHMKELFDVIDIMRSPPKRKFKTGVFNNWDPRLEPDFVVYHAVLNACVRQKQWEGAFWVLQQLKKQGLQPSATTYGLVMEVMFSCGKYNLVHEFFRKLQKSFIPNSLTYRVLVNTLWKEGKTDEAILAVQEMENRGVVGSASLYYDLARCLCAAGRSHEALKQIDKICKVANKPLVVTYTGLMQASIDSGNIQDGAYIFEKMKEVCAPNLVTCNIMLKAYLEHGMFQEAKALFEQMSENANSLRGSADYKMLVVPDTYTFNTMLDACVSEQIWDYFDHVYQRMLYHGYHFNPKRHLQMILEASRAGKERPLEITWKHLTDMDRTPPTSMIKERFCAKLEKDEYVAALTCMTNNLPEDLQPFSKSSWLKLLKSNSHRFQKHTIVGLMNEASKIVSNNSLPNPTLEYLIQSCKKILFVTDISEADMDSVKNVLEGEVESKVVIANSR* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01017 897 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Lapu11g01017 897 PANTHER OS01G0674700 PROTEIN 73 875 IPR044645 GO:0009658
Lapu11g01017 897 Gene3D Tetratricopeptide repeat domain 611 770 IPR011990 GO:0005515
Lapu11g01017 897 MobiDBLite consensus disorder prediction 116 148 - -
Lapu11g01017 897 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Lapu11g01017 897 Pfam Pentatricopeptide repeat domain 626 672 IPR002885 -
Lapu11g01017 897 Pfam Pentatricopeptide repeat domain 485 534 IPR002885 -
Lapu11g01017 897 Gene3D Tetratricopeptide repeat domain 477 577 IPR011990 GO:0005515
Lapu11g01017 897 Gene3D Tetratricopeptide repeat domain 326 476 IPR011990 GO:0005515
Lapu11g01017 897 MobiDBLite consensus disorder prediction 163 196 - -
Lapu11g01017 897 FunFam Pentatricopeptide repeat-containing protein 331 477 - -
Lapu11g01017 897 Coils Coil 319 346 - -
Lapu11g01017 897 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 661 695 IPR002885 -
Lapu11g01017 897 Pfam PPR repeat 560 589 IPR002885 -
Lapu11g01017 897 Pfam PPR repeat 405 431 IPR002885 -
Lapu11g01017 897 SUPERFAMILY TPR-like 477 690 IPR011990 GO:0005515
Lapu11g01017 897 NCBIfam pentatricopeptide repeat 490 523 IPR002885 -
Lapu11g01017 897 NCBIfam pentatricopeptide repeat 405 438 IPR002885 -
Lapu11g01017 897 NCBIfam pentatricopeptide repeat 663 691 IPR002885 -
Lapu11g01017 897 MobiDBLite consensus disorder prediction 105 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01017 Lapu-Chr11 12517642 12525059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01017 508 758 Glycosyltransferase AT1G05670 20.079 7.41e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01017 - - gmx:100787028 1347.41