Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00961 ATGGACGACGTTTGCGAGGGTAAAGACTTCACATTCTCGAAGCAGGAGGAGAATATTCTAGAACTGTGGACCCAAATCGACGCATTCCGCACTCAGTTAGCTCTCACCAAGGACAAGCCAGAGTACATCTTCTACGATGGCCCTCCCTTCGCTACCGGCCTCCCTCACTACGGCCACATCCTCGCCGGCACCATCAAGGACATCGTCACGCGCTACCAGTCCATGACCGGCCACCACGTCACGCGCCGCTTTGGCTGGGACTGTCATGGCCTCCCCGTTGAGAACGAGATCGACAAGAAGCTCGGCATCAAGAAGCGCGAGGATGTCCTCAAACTCGGAATCGACAAGTACAACGAGGAGTGCCGCAGCATCGTCACGCGCTACGTCTCTGAGTGGGAGACCGTCATCACGCGCACCGGCCGTTGGATTGACTTCAAGAACGATTACAAGACAATGGACCTCAAGTTCATGGAGTCAGTGTGGTGGGTTTTTGCTCAGTTGTACGCCAAAAACCTTGTTTATAAAGGTTTCAAGGTCATGCCTTACAGCACCGGCTGCAAAACTCCGCTCTCTAATTTCGAGGCTGGACAGAATTATAAGGATGTATCCGATCCTGAAGTATTCATGACGTTTCCTGTCGTGGGTGATCTGCATGGTGCATCTTTTGTAGCATGGACTACGACTCCATGGACTCTTCCTAGCAATCTTGCTCTGTGTATCAATGCCAATTTTACATATGTGAAGGTTCGCAACAAGTACTCTGGTAAAGTTTATATTGTTGCTGAATCTCGTCTGTCTGCAATCCATAACCCTAAGGAGAAACCCAAAGAAGCTGTTGTTAATAGTTCAAATGACGTTTCTAAGAATAAAAATGCCAAGACCAAGGGAGCTTCAGGTGGTGGAAAAACAGAAAATGTTTTAGATTCTTTTGAATTGCTGGAGAAATTTTCAGGGGCATCATTAGTGGGGACAAAGTATGAACCATTATTTGATTACTTTAAGGAGTTATCTGATACAGCTTTTAGAGTTGTTGCCGACAATTATGTTACTGATGATAGTGGTACTGGTGTTGTCCATTGTGCTCCTGCTTTTGGTGAAGATGATTTCCGAGTTTGCATTGATAATAAAGTCCTTAGCAAGGATAATCTAACTGTAGCTGTTGATGATGATGGCTGCTTTACGGAAAAAATTACTGACTTTAAGGGGTGCTACATCAAACAAGCTGACAAAGATATCATTGAAGCTGTGAAGGCAAAGGGTAGACTGCTTAAGTCTGGAGCTTTTACACATTCTTATCCATACTGCTGGAGATCTGATACCCCTCTCATTTACAGAGCTGTTCCAAGCTGGTTTGTTAGAGTGGAGTTGTTGAAAGAGCAATTGCTGGAAAACAATAAGCAGACCTACTGGGTCCCTGATTTTGTCAAGGATAAGCGATTTCACAATTGGCTGGAAAATGCTAGAGATTGGGCAATTAGTCGTAGTAGATTTTGGGGAACCCCTCTTCCTCTATGGATTAGCGAGGATGAGAAGGAAATAGTTGTCATAGATTCTGTTGCAAAACTTGAAAAACTTTCAGGTGTAAAGGTGTTTGATCTTCATCGTCACAACATAGATCATATTACAATTAAATCTGACAGCGGTCGTGTACTTCGACGAGTTGATGATGTGTTTGACTGCTGGTTTGAGAGTGGATCCATGCCATATGCGTATATCCATTATCCCTTTGAAAACGTTGAGCTGTTTGAGAAGAATTTTCCTGGCCATTTTGTTGCTGAAGGGCTGGATCAAACACGTGGTTGGTTTTATACCCTTATGGTGCTAGCTACTGCTTTATTTGGCAAGCCTGCATTTAGGAATCTAATATGCAATGGACTTGTCCTAGCTGAAGATGGGAAAAAGATGAGTAAAAGCTTGAAAAATTATCCTTCACCAATGGATGTAATTAATGATTACGGAGCGGATGCCTTGCGACTGTACCTTATCAACTCTCCTGTGGTGCGTGCTGAGCCACTTCGTTTCAAGAAGGAAGGAGTTTATGGTGTTGTCAGGGATGTTTTTCTTCCTTGGTATAATGCATATCGGTTCCTTGTTCAAAATGCAAAGAGGCTGGAAGTTGAAGGTCTAGCACCTTTTGTCCCCTTTGATCAGGCCTCGCTTCTGAAGTCATCCAATGTTCTTGATCAATGGATTAACTCAGCCACCCAAAGCCTTATTCATTTTGTTAGACAGGAAATGGATGGGTACCGCCTTTACACGGTGGTTCCTTATCTTCTGAAGTTTCTTGATAACCTTACCAATATTTATGTAAGGTTCAACCGTAAGAGACTTAAAGGTCGTTCTGGGGAAGAAGACTGTAGGATAGCACTATCAACTCTCTACAATGTGCTTTTGTTATCCTGTAAAGTGATGGCGCCTTTTACACCTTTCTTCACTGAGGTGCTCTATCAAAATATGCGAAAAGTTTGTAAGGGATCAGAAGAAAGCATACACTATTGCAGTTTTCCCACAGAAGAAGGAAAGAGGGGAGAACGAATTGAGCAGAGTGTTTCAAGGATGATGACAATAATTGATCTGGCCAGAAACATTCGGGAACGGCACAACAAGCCTCTAAAGACTCCACTAAGGGAGATGGTTATAGTTCATCCCGATGAAGACTTTCTTGATGATATAAATGGAAAATTGAAGGAGTTTGTGCTAGAGGAACTCAATGTACGATCCCTTGTTCCATGTAATGATACTTTAAAATATTCATCCTTACGTGCCGAGCCTGAATTTAGTGTTTTAGGCAAGAGACTAGGAAAATCGATGGGCATTGTTGCCAAAGAAGTCAAAGCTATGTCACAGGAAAATATTTTGGCTTTTGAGAATGCTGGAGAAGTTATCATTGCAAATCACTGTTTGAAGCTAACTGATATTAAGGTTCTCCGTGATTTTAAACGACCCGATGGTATGACTGAAAGTGAGGTTGATGCTGCTGGAGATGGTGATGTTCTAGTGATATTGGACTTGCGTCCTGATGAGTCATTGTTTGAGGCTGGTGCTGCTCGAGAGATTGTTAATAGGATTCAGAAGTTGCGGAAGAAAGTTGCTCTTGAACCAACTGACACGGTGGAGGTTTACTTTGAATCATTAGACGATGACAAATCAGTTTCTGAAAGAGTTTTGCATTCGCAGGAATCCTACATCAGGGATACTATTGGTACTCAGCTGCTTCCAAATTCTCTGATGCCTGTGCATGCAGTTGTCCTTGGAGAAGAGAGGTTCCATGGGATAGCCGGCATGTCATTTGGTATCACTTTGACGAGACCTGCATTGATGTTTAACAAAAAAGCCATTCTTTCACTGTTTACAGGTGATGCAAAAAGTGCACATAATTTGCAAACTTACCTGTTATCAAGAGATCATTTGAAATTGAAGTCTGAGTTTCAAGATGGAAATAGAAAGAAAATTATTGATTCAATTGATCAGCTACCTGCTGTGGAAGTGGTTCTTGGTGAGCATGTTTGTCTCACTGTGGGGGACTATTACCTTGCTGGAAAATCTTGA 3549 0.428 MDDVCEGKDFTFSKQEENILELWTQIDAFRTQLALTKDKPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVENEIDKKLGIKKREDVLKLGIDKYNEECRSIVTRYVSEWETVITRTGRWIDFKNDYKTMDLKFMESVWWVFAQLYAKNLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVSDPEVFMTFPVVGDLHGASFVAWTTTPWTLPSNLALCINANFTYVKVRNKYSGKVYIVAESRLSAIHNPKEKPKEAVVNSSNDVSKNKNAKTKGASGGGKTENVLDSFELLEKFSGASLVGTKYEPLFDYFKELSDTAFRVVADNYVTDDSGTGVVHCAPAFGEDDFRVCIDNKVLSKDNLTVAVDDDGCFTEKITDFKGCYIKQADKDIIEAVKAKGRLLKSGAFTHSYPYCWRSDTPLIYRAVPSWFVRVELLKEQLLENNKQTYWVPDFVKDKRFHNWLENARDWAISRSRFWGTPLPLWISEDEKEIVVIDSVAKLEKLSGVKVFDLHRHNIDHITIKSDSGRVLRRVDDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYTLMVLATALFGKPAFRNLICNGLVLAEDGKKMSKSLKNYPSPMDVINDYGADALRLYLINSPVVRAEPLRFKKEGVYGVVRDVFLPWYNAYRFLVQNAKRLEVEGLAPFVPFDQASLLKSSNVLDQWINSATQSLIHFVRQEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEEDCRIALSTLYNVLLLSCKVMAPFTPFFTEVLYQNMRKVCKGSEESIHYCSFPTEEGKRGERIEQSVSRMMTIIDLARNIRERHNKPLKTPLREMVIVHPDEDFLDDINGKLKEFVLEELNVRSLVPCNDTLKYSSLRAEPEFSVLGKRLGKSMGIVAKEVKAMSQENILAFENAGEVIIANHCLKLTDIKVLRDFKRPDGMTESEVDAAGDGDVLVILDLRPDESLFEAGAAREIVNRIQKLRKKVALEPTDTVEVYFESLDDDKSVSERVLHSQESYIRDTIGTQLLPNSLMPVHAVVLGEERFHGIAGMSFGITLTRPALMFNKKAILSLFTGDAKSAHNLQTYLLSRDHLKLKSEFQDGNRKKIIDSIDQLPAVEVVLGEHVCLTVGDYYLAGKS* 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00961 1182 Gene3D HUPs 397 671 IPR014729 -
Lapu11g00961 1182 Gene3D HUPs 4 209 IPR014729 -
Lapu11g00961 1182 PRINTS Isoleucyl-tRNA synthetase signature 593 602 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Lapu11g00961 1182 PRINTS Isoleucyl-tRNA synthetase signature 553 566 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Lapu11g00961 1182 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Lapu11g00961 1182 PRINTS Isoleucyl-tRNA synthetase signature 223 246 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Lapu11g00961 1182 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lapu11g00961 1182 MobiDBLite consensus disorder prediction 280 298 - -
Lapu11g00961 1182 Pfam Anticodon-binding domain of tRNA ligase 728 877 IPR013155 GO:0004812|GO:0006418
Lapu11g00961 1182 CDD Anticodon_Ia_Ile_ABEc 674 861 IPR033709 GO:0000049
Lapu11g00961 1182 FunFam Isoleucine--tRNA ligase cytoplasmic 676 868 - -
Lapu11g00961 1182 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 689 937 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lapu11g00961 1182 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 201 432 IPR009008 GO:0002161|GO:0006418
Lapu11g00961 1182 Hamap Isoleucine--tRNA ligase [ileS]. 2 1083 IPR023586 GO:0004822
Lapu11g00961 1182 CDD IleRS_core 399 674 - -
Lapu11g00961 1182 Gene3D - 676 868 - -
Lapu11g00961 1182 FunFam Isoleucyl-tRNA synthetase,cytoplasmic 4 210 - -
Lapu11g00961 1182 Pfam Domain of unknown function (DUF5915) 897 1071 - -
Lapu11g00961 1182 MobiDBLite consensus disorder prediction 272 301 - -
Lapu11g00961 1182 Pfam tRNA synthetases class I (I, L, M and V) 309 670 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lapu11g00961 1182 Pfam tRNA synthetases class I (I, L, M and V) 19 274 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lapu11g00961 1182 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 1098 IPR023586 GO:0004822
Lapu11g00961 1182 FunFam Isoleucine--tRNA ligase cytoplasmic 397 672 - -
Lapu11g00961 1182 SUPERFAMILY Nucleotidylyl transferase 10 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00961 Lapu-Chr11 12067133 12083791 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00961 K01870 - gmx:100791830 2250.71