Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00952 ATGGCTACCAACACCGTTCATGGCAACAATGAATCTGCTCAACCCAACAACCTTGCTTCCTCAAAGCAGCCTCTCCCTCCTGCCAAGACTGTTGATTCTCAATCTGTTCTCAGAAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGGATATCTGCATTTCCTGAGGAGGACAACATATTTTTCTGGAAGGGAACAATCACAGGAAGCAAAGACACTGTGTTTGAAGGCACGGAATATAAGCTGTCCCTCTCTTTTCCCAATGATTACCCTTTTAAGCCTCCAAAAGTCAAGTTTGAAACAACCTGCTTCCACCCCAATGTGGATGTGCATGGCAATATATGCTTAGACATACTCCAGGATAAATGGTCATCTGCTTATGATGTTAGAACAATTCTTATATCCATCCAAAGTCTTCTTGGAGAGCCAAACATTAGTTCACCACTAAATCCACAAGCAGCACAGCTCTGGAGCAATCAAGAAGTAAGCGAAAGGATGAAGCCACATTTGTTTTTTGAGGGCGTCCTTTTCTGA 546 0.4322 MATNTVHGNNESAQPNNLASSKQPLPPAKTVDSQSVLRRLQSELMALMMSGDSGISAFPEEDNIFFWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETTCFHPNVDVHGNICLDILQDKWSSAYDVRTILISIQSLLGEPNISSPLNPQAAQLWSNQEVSERMKPHLFFEGVLF* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00952 181 CDD UBCc 38 167 IPR000608 -
Lapu11g00952 181 Gene3D Ubiquitin Conjugating Enzyme 29 173 IPR016135 -
Lapu11g00952 181 MobiDBLite consensus disorder prediction 1 33 - -
Lapu11g00952 181 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 35 181 IPR000608 -
Lapu11g00952 181 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 38 165 - -
Lapu11g00952 181 SUPERFAMILY UBC-like 32 163 IPR016135 -
Lapu11g00952 181 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 108 123 IPR023313 -
Lapu11g00952 181 FunFam ubiquitin-conjugating enzyme E2 20 29 177 - -
Lapu11g00952 181 Pfam Ubiquitin-conjugating enzyme 39 165 IPR000608 -
Lapu11g00952 181 SMART ubc_7 38 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00952 Lapu-Chr11 11984151 11985962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00952 37 144 Miscellaneous Gene Families AT3G17000 31.858 1.10e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00952 K06688 - gmx:100305664 310.071