Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00890 ATGAAAAGAGGATTCAGTGTTAGAGCTTTGCTCATTTCCTTTCGAAACTGTAACCCTCTGTCGCCACCGCCGCCGCTGCTTCCACTCTCTACCCGCTTTCACGCCGCCAGATCTCTCTATTGTCCGTCGTCTTCCGCCGTAGCCATGCCCGGAGCTGAGACTCACGATGTGGAGTGGCCGGCGAACCGCGTGAGGGACACTTTCATGGGCTTCTTCCAAGACAAGAATCATGTCTACTGGAAGTCCAGCCCCGTCGTCCCCTTCAATGACCCTACTCTTCTCTTCGCCAACGCTGGTATGAACCAGTACAAGCCAATTTTTTTGGGAACTGCGGATCCCAACACTGCCTTGAGTAAACTCTCTCGTGCTTGCAACACGCAGAAGTGCATTCGAGCTGGTGGTAAACACAATGATCTTGATGATGTAGGGAAGGATACCTACCATCACACCTTCTTTGAGATGTTGGGAAATTGGTCCTTTGGGGATTACTTTAAAGAGGAAGCCATCAGCTGGGCGTGGGAGCTTCTAACCAAAGTTTACAAGTTACCATCAGATCGCTTGTATGCCACTTATTTTGGTGGTGATGATAAGTCTGGTCTTGCCCCTGATCTTGAGGCTAGAGATATATGGCTAAAGTTTTTGCCTCCTGGACGTGTGCTTCCTTTTGGCAGTAAAGACAATTTCTGGGAAATGGGTGATACTGGTCCTTGCGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGCGATGCTGCATCAATGGTTAATTACGATGATCCTACTTGCATTGAGATATGGAATCTTGTCTTCATTCAGTTCAATAGGGAGGCTGATGGATCTCTTAAACCCCTTCCAGCAAAGCATGTTGATACGGGCTTGGGTTTTGAGCGATTGACGTCTATACTGCAGAACAAAATGAGCAATTATGACACAGATGTCTTCTTGCCAATCTTTGATGTTATTCAGCGGGCAACCGGTGCCAGACCTTATTCTGGTAAAGTTGGACCAGATGATGTGGATAAAGTTGACATGGCATACAGGGTTGTTGCAGATCACATCAGAACCCTTTCATTTGCCATTGCTGATGGGTCTCGTCCTGGTAATGATGGTCGTGAGTATGTTCTGAGACGTATACTCCGTCGAGCTGTTCGGTATGGACGTGAAGTGCTAAAAGCTAAAGAGGGATTTTTCAATGGGCTTGTAAGTGTGGTGGTGAATCTGATGGGTGATGTTTTCCCTGAGCTAAAACAACAGGAAACTCACATTCGGAATGTAATTGCAGAGGAGGAGGAAAGTTTTGGAAGAACCTTAATTAAGGGTATTGAGAAATTTGAGACAGCTGTTCGACATGTTCAGGGAAAGATACTGAGTGGGGAGGCAACATTTGTCTTGTGGGATACGTATGGCTTCCCATTAGATCTCACTCAGCTGATGGCTGAAGAAAAAGGATTAGTTGTTGATGTTAAAGGTTTTGATAGGGCTATGGAGGCTGCAAGAGAGAGATCCAGAAGTGCTCAAACAAAGCAAGCCGGCGGTGCCATTGTCATGGACGCTGATGCTACCTCAGCATTGCACAAAAGGGGCATTTCCCCAACAAATGATAGCTTCAAATATGCCTGGTTCAAGGACCATGAGAGTGTGGTACAAGCAATATATACTGGTTCTGAATTTGTTGATACTGTTAATACTGGTGATGATATTGGCTTGGTTCTAGAATCTACAAGCTTCTATGCTGAGCAAGGTGGACAGATTTTTGATACTGGATCACTTGAGGGTACACATGGTTCATTTCAAGTGCATAACACTCAAGTTTACGGAGGCTTTGTTCTTCACATTGGTAGTGGGACCGGTGTCTCTGTTGGTGACAAAGTAGTATGCAAGGTTGACTATGGAAGACGTGCCCTTGTAGCCCCTAACCATACCTGCACACACATGTTAAACTTTGCTCTTAGGGAAGTACTTGGCGATCATGTTGACCAGAAAGGATCCATTGTTCTACCTGAAAAATTGAGATTTGACTTTTCTCATGGCAAGCCTGTTGACGCTGACAATTTAAGGAGAATTGAGTCAATTGTTAATGAACAAATTAAAGCTGAATTGGATGTAAGTGCAAAGGAGGCAACTCTTGCTGAAGCCAAGCGTATTAATGGTTTACGAGCTGTTTTTGGAGAAGTCTATCCTGATCCTGTTAGAGTTGTGTCAATTGGACAAAAAGTTGATGATCTTCTTGGTGACCCTGAGAATGAAAAATGGTTATCCATTTCATCAGAATTATGTGGAGGCACCCATATTTCAAACACACGTGAGGCAAAAGCTTTTGCACTTTTATCTGAGGAGGGCATTGCAAAAGGCATACGCAGAATAACAGCTGTCACAACTGATCGTGCTTATGATGCAATGAAAGTGGCAGATGAATTTGAGCAGCAAGTAGATGATGCAGCTAAGTTAGATGGAAGTTTGCTGGAAGAGAAAGTTTCATCATTGAAAAGCAATGTTGAAACTTTATCAATTCCTGCTGCCAAGAAAGCTGACATCAAGACCAAGATAGCCCGACTTCAGGATCAAGTGAGGAAAGCGCAAAAGCAGGTTGCTGAGGAGAACAAGCGGAAAGCTGTAATTATTACAGCTGAGAAGGCTGAGCTTGCTGCTTCCAATGGGAAAACATTTTGCATCTCTCGAGTTGATGTCGGTCTGGATGTAGCTGCAGTTCGTGAGGCTGTTACAAAAGTCATGGACCAGAAGGGCTTATCTGTGATGGTTTTTAGCACGGATGAATCAACAAACAAGGCTGTAATTTGTGCTGGGGTGCCAGAGAAAGGAGATAAAGGTAAGCTAGATGTGGCAGAGTGGCTGACTAATGCATTGGGGCCTCTAAAAGGGAGATGTGGTAAAGGAAAAGGTGGTCTCGCAACGGGTCAGGGTACAGATGCAGCACATGTAAACGAGGCTATGGATCTTGCAGAAAAATTTGCATCAATTAAATTGAGTTAA 2997 0.4454 MKRGFSVRALLISFRNCNPLSPPPPLLPLSTRFHAARSLYCPSSSAVAMPGAETHDVEWPANRVRDTFMGFFQDKNHVYWKSSPVVPFNDPTLLFANAGMNQYKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISWAWELLTKVYKLPSDRLYATYFGGDDKSGLAPDLEARDIWLKFLPPGRVLPFGSKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASMVNYDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFLPIFDVIQRATGARPYSGKVGPDDVDKVDMAYRVVADHIRTLSFAIADGSRPGNDGREYVLRRILRRAVRYGREVLKAKEGFFNGLVSVVVNLMGDVFPELKQQETHIRNVIAEEEESFGRTLIKGIEKFETAVRHVQGKILSGEATFVLWDTYGFPLDLTQLMAEEKGLVVDVKGFDRAMEAARERSRSAQTKQAGGAIVMDADATSALHKRGISPTNDSFKYAWFKDHESVVQAIYTGSEFVDTVNTGDDIGLVLESTSFYAEQGGQIFDTGSLEGTHGSFQVHNTQVYGGFVLHIGSGTGVSVGDKVVCKVDYGRRALVAPNHTCTHMLNFALREVLGDHVDQKGSIVLPEKLRFDFSHGKPVDADNLRRIESIVNEQIKAELDVSAKEATLAEAKRINGLRAVFGEVYPDPVRVVSIGQKVDDLLGDPENEKWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRAYDAMKVADEFEQQVDDAAKLDGSLLEEKVSSLKSNVETLSIPAAKKADIKTKIARLQDQVRKAQKQVAEENKRKAVIITAEKAELAASNGKTFCISRVDVGLDVAAVREAVTKVMDQKGLSVMVFSTDESTNKAVICAGVPEKGDKGKLDVAEWLTNALGPLKGRCGKGKGGLATGQGTDAAHVNEAMDLAEKFASIKLS* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00890 998 Gene3D - 540 630 - -
Lapu11g00890 998 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 59 804 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Lapu11g00890 998 Coils Coil 844 871 - -
Lapu11g00890 998 FunFam Alanine--tRNA ligase 886 993 - -
Lapu11g00890 998 NCBIfam alanine--tRNA ligase 64 975 IPR002318 GO:0000166|GO:0005737
Lapu11g00890 998 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 312 512 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Lapu11g00890 998 Hamap Alanine--tRNA ligase [alaS]. 59 997 IPR023033 GO:0004813
Lapu11g00890 998 Gene3D - 884 993 - -
Lapu11g00890 998 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 732 790 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lapu11g00890 998 Gene3D Bira Bifunctional Protein; Domain 2 60 308 IPR045864 -
Lapu11g00890 998 PRINTS Alanyl-tRNA synthetase signature 265 276 IPR002318 GO:0000166|GO:0005737
Lapu11g00890 998 PRINTS Alanyl-tRNA synthetase signature 373 386 IPR002318 GO:0000166|GO:0005737
Lapu11g00890 998 PRINTS Alanyl-tRNA synthetase signature 349 365 IPR002318 GO:0000166|GO:0005737
Lapu11g00890 998 PRINTS Alanyl-tRNA synthetase signature 137 148 IPR002318 GO:0000166|GO:0005737
Lapu11g00890 998 PRINTS Alanyl-tRNA synthetase signature 292 305 IPR002318 GO:0000166|GO:0005737
Lapu11g00890 998 SUPERFAMILY Translation proteins 557 630 IPR009000 -
Lapu11g00890 998 SMART tRNA_SAD_4 732 791 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lapu11g00890 998 FunFam Alanine--tRNA ligase, cytoplasmic 58 308 - -
Lapu11g00890 998 Pfam DHHA1 domain 853 992 IPR003156 GO:0003676
Lapu11g00890 998 SUPERFAMILY ThrRS/AlaRS common domain 630 807 IPR018163 GO:0000166
Lapu11g00890 998 Gene3D - 631 807 - -
Lapu11g00890 998 SUPERFAMILY Class II aaRS and biotin synthetases 60 311 IPR045864 -
Lapu11g00890 998 FunFam Alanine--tRNA ligase 533 629 - -
Lapu11g00890 998 CDD AlaRS_core 61 307 - -
Lapu11g00890 998 PANTHER ALANYL-TRNA SYNTHETASE 54 994 - -
Lapu11g00890 998 Pfam tRNA synthetases class II (A) 64 632 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Lapu11g00890 998 FunFam Alanine--tRNA ligase, cytoplasmic 631 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00890 Lapu-Chr11 11495133 11507750 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00890 K01872 - gmx:100788271 1777.68