Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu11g00884 | ATGGCTTCGCCGGCGTGGTTGCCGCAGGAGGCGCAGCCACCTGTATCCGGAGAAACTTCTCTTCCTGTGGCTTCTCCCACCCCTAATTCCGCTCATGCAACTCCTTCTACCGCTCATTCAAAATCACTTAATGCAACTGCGTTTGTAGCTCCGGCACCGGCACCTCCATTTCCATACGGCGTTCTTCAGAGTACCAACTCTTCGGGGAGTTCTCAGCAGTCATCGACTCAAAATGTTATAAAATCCAACTCTACAGTGAATCCTGTGGTTTTTCAACCTCCAGTTCCTGGCGTCTCATCGCATGCTGCTCTTTCATTTTCGTATAATATTCCCCAGAGTGGTGCGGCTTTTTCTAGCAACCAGCACCATACTCAATCTAGCACTAACATATCGGATTCTGTTGTGCAGGATGTTACGAAATTGTCATCTGCGTCAAGTACCTCACATTCTGTCCCTGCTCATACTTCCACATCCATAATGCCTCCCTCTGATCCTAATTATCGTCCAACTACTTCATGGATGCCCACTGCCATGTCTTTTCCTGTGCATCCTGTAATGCCTTCTCCAGGAAATCCTGGCCCTCCTGGATTAGCATCATCTTCTATAATATCCATCAATCCTGCTGTTCCATCCACAGGAACGGATTCTTCCTCAGCTGCATTACTGAGACCAAACATGGCAATTTCAGCCATTGCATCAGATCCTACTACCCCTTTGAGGGGTTTATCCTATCCATCCATGCCTTCCATGGCTGCTCCCCCTCAGGGACTTTGGTTAGGGACCCCACAGATGAGTGGTGCCTTTAGGCCCCCATATCTTCAATACCCTGCTCCTTTTCCTGCCCCCTTTCCATTTCCAGCACGTGGTGTTGCTCTCCCTGCTGTTCCAATACCTGATTCTCAACCTCCTGGTGTTACACCTGTGAGTGGTGGTGGTGGTGGCACTTCTACACCTGCGTCCAGCAATCAGCAGAGGGGAACAACTGCTTTGCAAACAGAAGTTATTTCAGGGCCAGCTGATGATAAGAAGAAATTAAATGCTGTCATCACCCGGAATGAGGATGCTGCTAACAATGATCAATTAGAGGCCTGGACAGCCCACAAGACTGAAGCAGGAATTATATACTATTATAATGCCATGACTGGAGAATCAACATATGATAAACCCGCTGGATTTATTGGGGAGCCTCACCAAGTTTCTGCTCAGCCCACTCCAGTTTCAATGACGGATTTGCCTGGTACTGATTGGCTGTTGGTCTCTACTAGTGATGGAAAAAAATATTACTACAATAATCGAACCAAGACTAGCTGCTGGCAAATTCCAAATGAGGTGGCGGAATTGAAAAAGAAACAAGATGGTGATGTTACTAAAGATCAGTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGATCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAATCTACAGAGCTCATCATCGGCATTGGATTTGATCAAGAAGAAATTGCAGGACTCAGGAACACCTGTTACTTCTCCTTCTATTCCTACGCCATCAGTACAAACAGGATCTGAATCAAATGGTTCAAAAGCAGTTGAATCTATCTCTAAGGGCATGCAAGCAGATAATAGCAAAGATAAACAAAAAGATACTAATGGTGCTGCTAATGTTTCTGATACATCTTCAGATTCTGAAGATGAAGACAGTGGGCCTTCAAAGGAGGAGTGCATCATTCAATTCAAGGAGATGCTCAAGGAGCGAGGAGTGGCACCATTCTCAAAGTGGGAGAAAGAATTACCAAAGATAGTATTTGATCCACGTTTTAAGGCCATCCCAAGTTACTCTGCTAGGAGATCTTTGTTTGAGCATTATGTTAAAACTCGTGCTGAAGAGGAACGCAAAGAAAAGCGTGCTGCACAAAAAGCTGCAATTGAAGGATTTAAGCAATTACTGGATGAAGCATCAGAGGATATTAATCACAATACTGATTATCAAACTTTTCGGAAGAAATGGGGAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGAGCAAGAGCACCTATTGAATGAAAGAGTGCTTCCGTTGAAGAAAGCTGCTGACGAAAAGACTCAAGCATTGCGTGCAGCTGCTGCAGCCAGTTTTAAGTCAATGCTTAAAGAGCGTGGAGATATATCTTTCAACTCACGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGATGACCCAAGATATAAATCTGTGAGGCATGAGGATAGGGAAGTTTTGTTCAATGACTATTTATCTGAACTGAAAGCTGCTGAACACGCAGCTGAAAGAGAGACCAAAGCTAAAAGGGAGGAGCAGGACAAGCTCAGGGAAAGAGAACGTGAGCTGCGCAAAAGGAAGGAAAGAGAAGAACAGGAAATGGAGAGGGTGCGACTAAAAATTCGAAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTGGTGGAGACAATCAAAGATCCTCTGGCATCATGGACGGAATCCAAGCCTAAATTAGAAAAGGATCCTCAAGGACGCGCAACTAATCCTGAACTCGATTCTTCTGACACGGAAAAGTTGTTTCGGGAACACGTAAAGATGCTTCAGGAGCGATGTGCTCACGAGTTTAGAGTTCTCTTAGCTGAAGTATTGACTTATGATGCTGCATCTCATGAAAATGACGATGGGAAAACAGTGCTTAATTCTTGGTCTACAGCTAAGCGAGTTCTAAAATCTGATCCAAGATATAACAAAGTTTCAAGAAAAGAAAGAGAAGCATTGTGGCGCCGGTATGCAGAGGATATGCTGCGGCGGCAAAAAGCATCTCATTCACATGATTCCAGGGATGAGAAACATACTGATACTAAAGGTAGAAATCCTCTAGAATCTTCCAAATATCCATTCGAATCTGGGAGATCGCACGACCGAAGATAA | 2967 | 0.4446 | MASPAWLPQEAQPPVSGETSLPVASPTPNSAHATPSTAHSKSLNATAFVAPAPAPPFPYGVLQSTNSSGSSQQSSTQNVIKSNSTVNPVVFQPPVPGVSSHAALSFSYNIPQSGAAFSSNQHHTQSSTNISDSVVQDVTKLSSASSTSHSVPAHTSTSIMPPSDPNYRPTTSWMPTAMSFPVHPVMPSPGNPGPPGLASSSIISINPAVPSTGTDSSSAALLRPNMAISAIASDPTTPLRGLSYPSMPSMAAPPQGLWLGTPQMSGAFRPPYLQYPAPFPAPFPFPARGVALPAVPIPDSQPPGVTPVSGGGGGTSTPASSNQQRGTTALQTEVISGPADDKKKLNAVITRNEDAANNDQLEAWTAHKTEAGIIYYYNAMTGESTYDKPAGFIGEPHQVSAQPTPVSMTDLPGTDWLLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDQLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSNLQSSSSALDLIKKKLQDSGTPVTSPSIPTPSVQTGSESNGSKAVESISKGMQADNSKDKQKDTNGAANVSDTSSDSEDEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDINHNTDYQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAADEKTQALRAAAAASFKSMLKERGDISFNSRWSRVKESLRDDPRYKSVRHEDREVLFNDYLSELKAAEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQGRATNPELDSSDTEKLFREHVKMLQERCAHEFRVLLAEVLTYDAASHENDDGKTVLNSWSTAKRVLKSDPRYNKVSRKEREALWRRYAEDMLRRQKASHSHDSRDEKHTDTKGRNPLESSKYPFESGRSHDRR* | 989 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu11g00884 | 988 | SUPERFAMILY | FF domain | 642 | 711 | IPR036517 | - | |
| Lapu11g00884 | 988 | ProSiteProfiles | FF domain profile. | 821 | 878 | IPR002713 | - | |
| Lapu11g00884 | 988 | SUPERFAMILY | FF domain | 880 | 951 | IPR036517 | - | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 13 | 44 | - | - | |
| Lapu11g00884 | 988 | ProSiteProfiles | FF domain profile. | 583 | 637 | IPR002713 | - | |
| Lapu11g00884 | 988 | SMART | FF_2 | 583 | 637 | IPR002713 | - | |
| Lapu11g00884 | 988 | SMART | FF_2 | 880 | 945 | IPR002713 | - | |
| Lapu11g00884 | 988 | SMART | FF_2 | 718 | 772 | IPR002713 | - | |
| Lapu11g00884 | 988 | SMART | FF_2 | 821 | 878 | IPR002713 | - | |
| Lapu11g00884 | 988 | SMART | FF_2 | 650 | 705 | IPR002713 | - | |
| Lapu11g00884 | 988 | SUPERFAMILY | WW domain | 363 | 393 | IPR036020 | GO:0005515 | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 779 | 810 | - | - | |
| Lapu11g00884 | 988 | Gene3D | FF domain | 717 | 789 | IPR036517 | - | |
| Lapu11g00884 | 988 | FunFam | Pre-mRNA-processing protein 40C isoform C | 646 | 709 | - | - | |
| Lapu11g00884 | 988 | Pfam | FF domain | 721 | 769 | IPR002713 | - | |
| Lapu11g00884 | 988 | Pfam | FF domain | 589 | 634 | IPR002713 | - | |
| Lapu11g00884 | 988 | Pfam | FF domain | 886 | 942 | IPR002713 | - | |
| Lapu11g00884 | 988 | Pfam | FF domain | 824 | 875 | IPR002713 | - | |
| Lapu11g00884 | 988 | Pfam | FF domain | 653 | 700 | IPR002713 | - | |
| Lapu11g00884 | 988 | FunFam | Pre-mRNA-processing protein 40C | 818 | 878 | - | - | |
| Lapu11g00884 | 988 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 364 | 391 | IPR001202 | GO:0005515 | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 141 | 165 | - | - | |
| Lapu11g00884 | 988 | Pfam | WW domain | 362 | 389 | IPR001202 | GO:0005515 | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 310 | 329 | - | - | |
| Lapu11g00884 | 988 | FunFam | Pre-mRNA-processing protein 40C | 710 | 784 | - | - | |
| Lapu11g00884 | 988 | CDD | WW | 364 | 389 | IPR001202 | GO:0005515 | |
| Lapu11g00884 | 988 | SUPERFAMILY | WW domain | 415 | 447 | IPR036020 | GO:0005515 | |
| Lapu11g00884 | 988 | ProSitePatterns | WW/rsp5/WWP domain signature. | 416 | 441 | IPR001202 | GO:0005515 | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 845 | 867 | - | - | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 947 | 988 | - | - | |
| Lapu11g00884 | 988 | Gene3D | - | 401 | 459 | - | - | |
| Lapu11g00884 | 988 | Gene3D | - | 350 | 400 | - | - | |
| Lapu11g00884 | 988 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 416 | 443 | IPR001202 | GO:0005515 | |
| Lapu11g00884 | 988 | Gene3D | FF domain | 879 | 945 | IPR036517 | - | |
| Lapu11g00884 | 988 | Gene3D | FF domain | 818 | 878 | IPR036517 | - | |
| Lapu11g00884 | 988 | ProSitePatterns | WW/rsp5/WWP domain signature. | 364 | 389 | IPR001202 | GO:0005515 | |
| Lapu11g00884 | 988 | Gene3D | FF domain | 641 | 716 | IPR036517 | - | |
| Lapu11g00884 | 988 | SUPERFAMILY | FF domain | 712 | 776 | IPR036517 | - | |
| Lapu11g00884 | 988 | ProSiteProfiles | FF domain profile. | 718 | 772 | IPR002713 | - | |
| Lapu11g00884 | 988 | Coils | Coil | 770 | 825 | - | - | |
| Lapu11g00884 | 988 | ProSiteProfiles | FF domain profile. | 650 | 705 | IPR002713 | - | |
| Lapu11g00884 | 988 | FunFam | pre-mRNA-processing protein 40C isoform X1 | 568 | 645 | - | - | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 296 | 329 | - | - | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 60 | 80 | - | - | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 947 | 970 | - | - | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 513 | 583 | - | - | |
| Lapu11g00884 | 988 | CDD | WW | 414 | 443 | IPR001202 | GO:0005515 | |
| Lapu11g00884 | 988 | SUPERFAMILY | FF domain | 578 | 643 | IPR036517 | - | |
| Lapu11g00884 | 988 | SMART | ww_5 | 411 | 443 | IPR001202 | GO:0005515 | |
| Lapu11g00884 | 988 | SMART | ww_5 | 359 | 391 | IPR001202 | GO:0005515 | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
| Lapu11g00884 | 988 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 68 | 976 | IPR045148 | GO:0003712|GO:0070063 | |
| Lapu11g00884 | 988 | FunFam | Pre-mRNA-processing protein 40C | 880 | 945 | - | - | |
| Lapu11g00884 | 988 | SUPERFAMILY | FF domain | 814 | 883 | IPR036517 | - | |
| Lapu11g00884 | 988 | Gene3D | FF domain | 568 | 640 | IPR036517 | - | |
| Lapu11g00884 | 988 | MobiDBLite | consensus disorder prediction | 513 | 549 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu11g00884 | K12824 | - | gmx:100815386 | 1512.28 |